Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01770 ATGGAATCTCTGTTCAAAGCTTACGCAAATTCCTCTGACGATTACGACGAAGAAGATGAACCTAAGCCCAAGCGCTTGGCCCTCTTCTCTTCACCTTCAAAGAGACCCGAACACGAACCTTTTAAATTCAAGCCGAACTTATGGTCATTGCATTGCTCGGACTCTAATTCTGAGCTTCATGAGAGGATTATGGTTCCTGGACGCTACGTTTCCAAGAGAGAGCGAGCACTCTTGAGTTCAGCTCCAGCTTCAAGGGCTCCAGAGTCATTTCCTAACCCATCACTTCAATCTCCACCTGTTGGAAGTCTTTTGGATTCTGATCTTCCAGTTGATATCTTGTCACTATTGAGAAGTAGAGCCAAAGACTATTTACAGCAAGGTCTGATGCCTAAAAGGATGTCTGTAACTCTTGATTGCCATAGGAAAGCTGTCAATTCAGTTCAATGGTCACCAAGTCATGCTCATCTCCTTGCTTCTGCTGCTATGGATCACACAATCTGCATATGGAACGTATGGAGCACAGGGCAGAAGCTAGCACTCAAGTCAAGCTTCCACAACGCTGCAGTTAAAGATGTTCAGTGGTCTCAACAAGGATTATCTGTTCTTTCTTGTGGATACGATTGTGCTTCAAGATTGATTGATGTTGAGAAGGGGACAGAAGTTGGAGTATTCAAGGAGGATCAAGGCGTTTCAGTAGTAAAGTTCCATCCTAACAACCCAAATCTCTTCCTTTCAGGTGGACTTAAAGGCAGCCTTCGAATGTGGGATATGAGAATTGGAAAAATGGTTAACAAATACAATCGACGCCTTGGTCCAATCCTTGATGTTGAGTTTACTCCCAATAGCAATCAGTTCATCTCTTCTAGCGATGTTTCCACAAGCAATAGCAGTGAAAGCTCTATCATCGTTTGGGATGTCACTAGAGAAGTTCCGCTTTCATATCAGGTTTATATGGAAGCCTATACTTGTCCATCTGTGAGATGTCACCCCTTTGATCCAGCTTTTATCGCCCAATCAAATGGAGGTTATATTGCAATATTCTCTCTGAATCCACCTTTCAAGTTAGACAAATACAAGAGGTATGAAAGTCATGGAGTCTCAGGCTTTCCAATAAAATGTAACTTCAGCCTTGATGCCAAGCAAATCATCTCTGGGTCTTCAGATGGCTCTATATATTTTTATGATTATAAATCCTCCTTGCTTATACATAAACTAAAAGCATCTGAACAGGCCTGCATAGATATTGCCATCCACCCGACCTTGCCTAATGTAATCGCTTCGTGCAGTTGGGATGGGAAGATCTCAGTGTTCCAGTGA 1317 42.67 MESLFKAYANSSDDYDEEDEPKPKRLALFSSPSKRPEHEPFKFKPNLWSLHCSDSNSELHERIMVPGRYVSKRERALLSSAPASRAPESFPNPSLQSPPVGSLLDSDLPVDILSLLRSRAKDYLQQGLMPKRMSVTLDCHRKAVNSVQWSPSHAHLLASAAMDHTICIWNVWSTGQKLALKSSFHNAAVKDVQWSQQGLSVLSCGYDCASRLIDVEKGTEVGVFKEDQGVSVVKFHPNNPNLFLSGGLKGSLRMWDMRIGKMVNKYNRRLGPILDVEFTPNSNQFISSSDVSTSNSSESSIIVWDVTREVPLSYQVYMEAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLLIHKLKASEQACIDIAIHPTLPNVIASCSWDGKISVFQ* 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20870065 20889847 + Chy6G122980.1 Chy06g01770 229479

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01770 438 Gene3D - 115 438 IPR015943 GO:0005515
Chy06g01770 438 SMART WD40_4 398 438 IPR001680 GO:0005515
Chy06g01770 438 SMART WD40_4 130 170 IPR001680 GO:0005515
Chy06g01770 438 SMART WD40_4 175 214 IPR001680 GO:0005515
Chy06g01770 438 SMART WD40_4 259 305 IPR001680 GO:0005515
Chy06g01770 438 SMART WD40_4 356 395 IPR001680 GO:0005515
Chy06g01770 438 SMART WD40_4 217 256 IPR001680 GO:0005515
Chy06g01770 438 MobiDBLite consensus disorder prediction 17 41 - -
Chy06g01770 438 MobiDBLite consensus disorder prediction 1 41 - -
Chy06g01770 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 137 171 IPR001680 GO:0005515
Chy06g01770 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 223 265 IPR001680 GO:0005515
Chy06g01770 438 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 137 171 - -
Chy06g01770 438 SUPERFAMILY WD40 repeat-like 129 437 IPR036322 GO:0005515
Chy06g01770 438 ProSitePatterns Trp-Asp (WD) repeats signature. 157 171 IPR019775 -
Chy06g01770 438 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 1 438 - -
Chy06g01770 438 Pfam WD domain, G-beta repeat 136 170 IPR001680 GO:0005515
Chy06g01770 438 Pfam WD domain, G-beta repeat 228 256 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01770 K24742 WDR25; WD repeat-containing protein 25 - csv:101214186 822.002
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01770 Chy-Chr6:20870065 Chy10g00907 Chy-Chr10:14762874 1.06E-52 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g385 . . . . . . Bma10g00525 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1113 Cone15ag1127 . . . . Blo07g00929 . Bda05g00747 . . Bpe03g00812 . . . . . . . Car04g00870 . . Cpe01g00843 . . . . . . . . . . . . . . . . Chy06g01770 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008063 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 2 1 1 1 1 1 2 2 2 1 1 1 1 33