Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01813 ATGCCAAGGAAGCGAAAACTTGCAGAACATAGAAAGTCACTTCCAGTAGCTTCCGTTGAAAGTTCGCTCATACAAGAGGTGCTTAGAAACGATACATTGATTATCGTTGGTGAAACTGGGAGTGGAAAAACGACGCAAATACCACAGTTCCTGTTTAATGCTGGATTTTGTCGAGATGGCAAAGCTATAGGGGTGACCCAACCTCGGCGTGTTGCTGCTGTAACTGTGGCCAAAAGAGTCGCCGAGGAATGTGGTGTTGAAGTGGGGCAAAAGGTTGGGTATTCTATCAGATTTGAGGATGTAACTTCTAGTTCCACAAGAATCAAGTACATGACAGATGGTCTACTGCTAAGGGAGGCATTGTTGGACCCTTATCTTTCAAGATATTCAGTCATCATTGTTGATGAAGCTCATGAGAGAACGGTTAATACTGATGTATTGCTAGGATTTTTGAAAAAAGTGCAGAAAACAAGATCTAGGTCTTTGAATGACTCTTTTAATACAGAGAATATGAATACTAATGGCCCAGTGTTAGAAAAGGGAAATAATGGCAAATATGTAAGTTCCCTCAGGCAACATCGAGGAAGGAAACTGCCTCCATTGAAGTTAATTATCATGTCTGCCAGCTTAGATGCACGACTTTTTTCTGAGTACTTTAGTGGTGCAAAGGCTTTTCGTGTCCAAGGCCGTCAATATCCAGTAGCTATATCTTATACTCGTAAGCATGTATTAGATTATACGGAGGCCACTCTTATTACTATATTTCAGATTCATTTGGAAGAGAGTCCTGGTGACATACTTGCCTTTTTGACTGGGCAAGATGAGATAGAATCTATTGAAACTCTTGCTAAGGAGACAATTCAAAAGTTACCTGAAAGCAAACGGAATTTAGTAGTTATACCTATATATTCGGCACTTCCATCGGAGCAACAATTGCGAGTTTTTGCCCCAACTCCACCTGGAGTTCGTAAGGTGATATTAGCGACAAATATTGCTGAAACATCTGTGACAATACCTGGAATCAAGTATGTTATTGATCCTGGATTTGTAAAAGCGCGCACTTATGATCCAAATAAAGGGATGGAGTCGTTGATTGTTTTTCCAACCTCAAAAGCACAAGCACTACAAAGGAGTGGGCGTGCAGGCCGTGAAGGACCTGGAAAATGCTTCCGTCAATATCCTGAGGATATGTTTTATAAACTTGAGGATTCAACAAAGCCGGAGATCAAGAGATGCAACCTTTCTAATGTCATCTTACAGTTGACGGCTTTAGGTGTTGATAATGTCACGGAATTTGATTTCTTGGAAGCACCACCAAGGCAAGCTATTTTCAAGTCGTTGGAGCAGTTGTTTCTGCTTGGGGCTATTACCAATGACGGCAAACTAAAACTATCTGATCCAGTTGGACATCAGATGGCTCGTATTCCGTTAGATCCAATATACTCTAAAGCTCTGATTGTTGCCAGTCAGTTCAACTGTTTGGAAGAAATGTTGATAACTGTGTCAATGCTGTCAGTGGAATCCATTTTTTACCATCCTCGTGAAAAGCAAGAAGAGGCAAGAGCTAAAATGAAATGTTTTTCAAGTCCAGAAGGTGATCATCTCACTCTAATCAATGTTTATCGATCTGCTGTGGACTTTTTGAATAAGAAAAAGTTGGAACTTAACAAAGAAAAATTGGAGAAAAGCTTGAGAAAGTGGTGCAAAGAAAATTTTATCAATAGTAGATCTTTGAGACACGCACGTGACATTCACAGTCAAATTAGACGACATGTTGAACAAATGGGCCTTCCTCTTAACTCTTGTGGAGATGACATGCTTCAGTTTTGTAGATGCCTTGCTGTTTGGTGGCATACAACATTGGACTGCTCCACTCCAGAAGGAATGAGATCATCCCAGTGGACATTCAAATCGCTTTTTCCACCACCTTCTCCATCTTTTGGAATCAAAATTGAAATCAGAGATGGGATCGGAGCCAATAGAGAATTCCTGTGCCCACATAGTGAAAGTTCTTCATTTTGTATTCTGGGACTGTTTGGCAGCTGCAATCGTTATTTAACATTCAAAAGGATTCACCCCACAGAAAAACTAGAAGGTTCTTTAGAAACAATCCCAACTGGGGGTTTTGCCATAGAGAGCATGGAGAATTTTGGAGCTGCTTCTTTGAGGAGTAGAAGGTTAGAGAGCTACTTCAATACAAGTTCTGAACCAAATAAGAGAGAAGTCCCAAAATATTCCGTTGATGAACAGATACCAAAGAGGGAGAAGACTTATATATATGTGGATGATAATGGGTGGAGTTCTGTTTTGATATCCTGTTTCAGAATTGTCTTTTGCTTTCTGACTATGATGGTTACTACTTTCGTTTGGGCTCTGATTATGCTTCTGCTCCTGCCATGGCCATACCAAAGGATTAGACAGGGCAATATATATGGCCATGTGACTGGCAGATTACTGATGTGGATCCTTGGGAATCCAATTAAGATTGAAGGTTCTGAGTTTTCAAATGAAAGGGCCATTTACATTTGCAATCATGCATCACCTTTGGATATTTTTCTCATAATGTGGCTGACACCCACAGGTTCTGTTGGCATTGCAAAAACGGAGATCATATGGTACCCTCTATTTGGACAACTGTACATTCTCGCTAACCATCTTCGCATTGATCGTTCAAATCCAGTTGCAGCAGTTGAGTCCATGAAACAGGTAGCTCGAGCAGTTGCGAAAAATAACTTGTCCTTGATCATATTCCCTGAGGGTACTCGGTCTAAGGATGGAAGGCTGCTTCCCTTCAAAAAGGGCTTTGTCCATTTGGCATTGCAAACACAGCTGCCAATAGTTCCTATTGTCTTCACTGGCACTCATCGGGCATGGAGAAAGGGCAGCTTACGTGTACGACCAGCTCCTCTAACTGTGAAGTATCTTCCTCCAATACAAACCAACAATTGGACAGTGGAAAAGATCGACGAATACGTGAAAACAGTACACGAAACTTATGCCAAACACCTACCAGAGTCGCAAAGACCTCATCAGTAA 3036 41.14 MPRKRKLAEHRKSLPVASVESSLIQEVLRNDTLIIVGETGSGKTTQIPQFLFNAGFCRDGKAIGVTQPRRVAAVTVAKRVAEECGVEVGQKVGYSIRFEDVTSSSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVNTDVLLGFLKKVQKTRSRSLNDSFNTENMNTNGPVLEKGNNGKYVSSLRQHRGRKLPPLKLIIMSASLDARLFSEYFSGAKAFRVQGRQYPVAISYTRKHVLDYTEATLITIFQIHLEESPGDILAFLTGQDEIESIETLAKETIQKLPESKRNLVVIPIYSALPSEQQLRVFAPTPPGVRKVILATNIAETSVTIPGIKYVIDPGFVKARTYDPNKGMESLIVFPTSKAQALQRSGRAGREGPGKCFRQYPEDMFYKLEDSTKPEIKRCNLSNVILQLTALGVDNVTEFDFLEAPPRQAIFKSLEQLFLLGAITNDGKLKLSDPVGHQMARIPLDPIYSKALIVASQFNCLEEMLITVSMLSVESIFYHPREKQEEARAKMKCFSSPEGDHLTLINVYRSAVDFLNKKKLELNKEKLEKSLRKWCKENFINSRSLRHARDIHSQIRRHVEQMGLPLNSCGDDMLQFCRCLAVWWHTTLDCSTPEGMRSSQWTFKSLFPPPSPSFGIKIEIRDGIGANREFLCPHSESSSFCILGLFGSCNRYLTFKRIHPTEKLEGSLETIPTGGFAIESMENFGAASLRSRRLESYFNTSSEPNKREVPKYSVDEQIPKREKTYIYVDDNGWSSVLISCFRIVFCFLTMMVTTFVWALIMLLLLPWPYQRIRQGNIYGHVTGRLLMWILGNPIKIEGSEFSNERAIYICNHASPLDIFLIMWLTPTGSVGIAKTEIIWYPLFGQLYILANHLRIDRSNPVAAVESMKQVARAVAKNNLSLIIFPEGTRSKDGRLLPFKKGFVHLALQTQLPIVPIVFTGTHRAWRKGSLRVRPAPLTVKYLPPIQTNNWTVEKIDEYVKTVHETYAKHLPESQRPHQ* 1012
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21800351 21834300 - Chy6G123410.1 Chy06g01813 229522

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01813 1011 SMART ultradead3 3 237 IPR014001 -
Chy06g01813 1011 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 130 139 IPR002464 -
Chy06g01813 1011 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 24 228 IPR014001 -
Chy06g01813 1011 PANTHER BNAA08G19730D PROTEIN 3 615 - -
Chy06g01813 1011 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 251 425 IPR001650 -
Chy06g01813 1011 SMART plsc_2 839 954 IPR002123 GO:0016746
Chy06g01813 1011 CDD SF2_C_RHA 232 393 - -
Chy06g01813 1011 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 594 IPR027417 -
Chy06g01813 1011 Pfam Helicase conserved C-terminal domain 255 384 IPR001650 -
Chy06g01813 1011 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 757 1004 - -
Chy06g01813 1011 SMART ha2_5 445 538 IPR007502 GO:0004386
Chy06g01813 1011 Gene3D - 231 404 IPR027417 -
Chy06g01813 1011 Pfam Acyltransferase 827 951 IPR002123 GO:0016746
Chy06g01813 1011 Gene3D - 1 230 IPR027417 -
Chy06g01813 1011 Gene3D - 430 530 - -
Chy06g01813 1011 SMART helicmild6 280 385 IPR001650 -
Chy06g01813 1011 Coils Coil 538 570 - -
Chy06g01813 1011 Pfam Helicase associated domain (HA2) 446 572 IPR007502 GO:0004386
Chy06g01813 1011 PANTHER ATP-DEPENDENT RNA HELICASE 3 615 - -
Chy06g01813 1011 CDD LPLAT_AGPAT-like 817 989 - -
Chy06g01813 1011 CDD DEXHc_DHX33 14 225 - -
Chy06g01813 1011 TIGRFAM AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases 836 951 IPR004552 GO:0003841|GO:0008654|GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01813 K12818 DHX8, PRP22; ATP-dependent RNA helicase DHX8/PRP22 [EC:3.6.4.13] - csv:101214201 1162.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01813 Chy-Chr6:21800351 Chy12g00901 Chy-Chr12:14400868 9.34E-154 dispersed
Chy08g00407 Chy-Chr8:9696810 Chy06g01813 Chy-Chr6:21800351 4.67E-16 dispersed
Chy06g01813 Chy-Chr6:21800351 Chy10g01185 Chy-Chr10:16622748 1.53E-75 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g506 . . . . Bpe09g00177 . Bma10g00546 Bma13g01055 . Cmo04g01027 . . . . . . . . . . . . . . Cla10g00508 Cam10g0503 Cec10g0520 Cco10g0507 Clacu10g0523 Cmu10g1349 Cre10g0754 . . Cone14ag1141 . . Csa03g00517 . Cme06g02256 Blo07g00907 Blo10g00829 Bda05g00723 Bda12g00906 . Bpe03g00793 . . . . . . . Car04g00894 . . Cpe01g00867 Bhi11g00622 . . . . Mch10g1268 . . . . . . . . Lsi05g00602 . Chy06g01813 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004978 2 2 0 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 2 1 6 1 2 3 1 2 2 1 41