Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01826 ATGGCAAACAACTTGGGACCTTTTTCTATCATTTCATCTCTTCTCTTCCTCTCTTTGATCATCGGAACAAGTTTAGCAGCTCGTAATCTAAATGACAATGTCTTAGAATGGGTAAAGAAGGACCATCGTCATTTTCTTCGTGCAATTATTCACGTATCAGATCTCGACCGTTCTATTCGGTTTTACACTAAAGGCTTCGGAATGAAAGTTCTGAAAAGAAGGAACTTCCCAGATCGTCAATATAGAGATGCCCTCGTTGGGTTTGGACCCGAAAACACTCACTTTTTGTTAGAATTAAGACAAAGACATGATTCCAATAATGTATTTATTGGGACAGAGTTTGGACACTTTGGGATTGCCACTCAAGATGTCTATAAATCTGTGGACCAAGCTAGAGTTAATGGTGCATTGGTGATCCAAAAACCCCGAAAAGTTAACCAAACCATGTTTGCCTTTGTGCAAGATCATGATGGCTATAAGTTTAAGCTCATTCAAAGCGAATGTTTAGCTGATCCTCTTGTTCAAATTATGCTTCATGTACAAGATTTGAATCGTTCCATCAACTTCTATACAAAGGCATTGGGCATGAAGTTGTTTGAAAAGAAAAACAATTCAACAGGACAGATTGTTTTAGGGACTTTGGGTTATGGAATAAACCAAAGTAAAACAACAGTATTGCAATTGGAAAAGAGGAAAAACATCCCTCGTGATGATGGACGAGATGGTTATTCAATGGTGTATATTGGTACTGACAATGTAAACAAGAGTGCTGAAGCAGCTAAGCTGGTAATGAAACAGCTTGGCGGTAACCTAATCATCGAGCCTATTCTACTGTCCAATATCAATGTCAAATTAACCGGCTTTTCTGATCCCGATAATTGGATAACGATTATGGTTGACAACAAAGATTATAGAAAGGGAAGGATTTGA 930 38.06 MANNLGPFSIISSLLFLSLIIGTSLAARNLNDNVLEWVKKDHRHFLRAIIHVSDLDRSIRFYTKGFGMKVLKRRNFPDRQYRDALVGFGPENTHFLLELRQRHDSNNVFIGTEFGHFGIATQDVYKSVDQARVNGALVIQKPRKVNQTMFAFVQDHDGYKFKLIQSECLADPLVQIMLHVQDLNRSINFYTKALGMKLFEKKNNSTGQIVLGTLGYGINQSKTTVLQLEKRKNIPRDDGRDGYSMVYIGTDNVNKSAEAAKLVMKQLGGNLIIEPILLSNINVKLTGFSDPDNWITIMVDNKDYRKGRI* 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22020352 22024051 - Chy6G123540.1 Chy06g01826 229535

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01826 309 Gene3D - 169 307 IPR029068 -
Chy06g01826 309 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 44 166 IPR037523 -
Chy06g01826 309 PANTHER LACTOYLGLUTATHIONE LYASE 12 306 - -
Chy06g01826 309 PANTHER LACTOYLGLUTATHIONE LYASE 12 306 - -
Chy06g01826 309 ProSitePatterns Glyoxalase I signature 1. 175 196 IPR018146 GO:0004462|GO:0046872
Chy06g01826 309 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 49 166 IPR029068 -
Chy06g01826 309 TIGRFAM glyox_I: lactoylglutathione lyase 33 173 IPR004361 GO:0004462|GO:0046872
Chy06g01826 309 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 174 296 IPR029068 -
Chy06g01826 309 Gene3D - 19 166 IPR029068 -
Chy06g01826 309 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 175 215 IPR004360 -
Chy06g01826 309 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 50 162 IPR004360 -
Chy06g01826 309 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 172 301 IPR037523 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01826 K01759 GLO1, gloA; lactoylglutathione lyase [EC:4.4.1.5] - csv:101203268 589.341
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01826 Chy-Chr6:22020352 Chy12g01070 Chy-Chr12:15824833 1.12E-76 dispersed
Chy06g01826 Chy-Chr6:22020352 Chy06g01830 Chy-Chr6:22062214 3.32E-140 proximal
Chy02g00406 Chy-Chr2:2560471 Chy06g01826 Chy-Chr6:22020352 6.90E-82 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g530 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00494 Cam10g0486 Cec10g0504 Cco10g0489 Clacu10g0505 Cmu10g1332 Cre10g0735 . . . . . Csa03g00500 . Cme06g02233 . . . . . . . . Sed04g0721 . . . Cma16g00898 . Car16g00874 . . Bhi11g00600 Tan01g1721 Cmetu06g0380 . Hepe07g1266 . . . . . . . . . . . Chy06g01826 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008029 0 2 0 0 0 2 1 2 2 1 2 2 1 1 2 1 2 0 1 2 2 1 2 0 2 1 1 2 1 0 36