Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01833 ATGATGAACAAGTTCAAGAAATCAGAAATTGTAGTGCTTTTAGGCCTCACAATTCTTCTAGTAATAACTCCTCTTCTTTCCTCATCCCTAAGACCAAAATATCTCTACTTCATCTTCAACCTCCTCATCATTGCCCTTGGAGTACAAGCTGGGCTTCTCAATGACCCTCCTCCTGATCATCAAGACAAGACCAACAAGCTTTCTCTAACTTCACCTGAAACCGTTGCTTCGTCCACGGAAACCTCCGCCCTCAAGAAGCATCGGGCTTTGGAGAAGGCTCACTCCGACAAGATTTCATCCGGCAATGTCAAAATGGAATCTCTTAAGAAGTGTCCCTCCGCTTCGAGTATTTTCTATATCGGAGAGGGCGATAGCGAGGCTGAGGAGACGAGAGGGATCGAGGACGGGGAAGAGGAGGTCGTTGTCGGGGGTGTCGGAAATAATAATGGTCAAGAATTGTTTGCTCAAGCTGAGACGTTTATTGGGAACTTTTACAAGCAGTTGAAGATGCAGAAAGAAGAGTCTTGGAAAAACATTCATGTGAGATGGCAGACTATGGGAAATTGGAGAGATGGTTTGAGCAACAATAACAATTCAAGAGTTATTGTTGATGAGAGCATAGAAGAGATGGAGCCTCTTGAACTTCTAATGGGAAGACTTGTGAGAGGTGAGGATCATACCCAACTCCAAAGAACAGGATTTGCTTGTCATACAGATTTACATTCCAAAGTATGTTTGACAAACAACCCAACAAGAATCAACAACACTAACCTTGAATTTTACATATCAACCAACAATGATTCTCAACAAAATAACTTTTCTCCAATCTTAATTCATCCGTATGCAAGACAGGAGGACAAAATCACCTTAAGAGATGTTACTCCACTCCAAATCATATTCCAACCAAACAAAACCCTTTTACCTCTTTGTCAATTCATCCATAATGTTCCTGTCCTCATCTTCTCCACCGGCGGCTTCACCGGTAATCTCTTCCACGAGTTCGACGAGACCATCATCCCTTTGTTCATCACTTCTTACCACTTTCAAACTCGGGTTCGGTTTCTCATTACCGATCACAAAACTTGGTGGGTTCAAAAATACAAACGAATTCTCTCTGGTTTATCTCGTTACAATGTCGTAAATCCAGCCGAAGATGGATCTGTCCATTGTTTCAATGGAGGTGTCATAGGATTGAAATTTCATAACATTTTATCGTTGAACAACACTGATATTCCCGGGGGTTATTCCATGTCTGATTTTCGGAGTTTCCTGAGACAAACCTATAATTTAAAAGTGCATAATGTGAGTGAAATGAGTGGGAAAAAACCAATGGTGATGTTGATATCTCGTCAAACCTCAAGGAGGTTTATGAACGAAGGAGAAATGGTTGAGATGATGAGGGAAGTTGGGTTTGAAGTGATGACGACAACGCCACAAAGAATGTCGAATTTGGACAAGTTTTCGTCGGTGGTTAACTTGTGTAGTGTAATCATTGGGGCACATGGGGCCGGGCTAACGAATGAGGTGTTCTTGGCAAACGGCGCAGTAGTGGTGCAAGTGGTGCCATTCGGGCTTGATTGGCCTTCTACATATTTCTTTGGGAAGCCAGCGGATGAGATGGAGCTTCAATATTTAGAGTATAAGATTGAGGCAAAGGAGAGTTCTTTATGGGATAAATATGGAGAAAATCATCCGGTTATTAGAGACCCTGAGTCCATATTTGCCCAAGGTTACTTTGCTAGTAGAGCTATTTATATAGATGAACAGAATTTGAAGATAAATTTGACTAGGTTTCGGGATACTATGATTCAAGTAAAGAAATTGACTGAAGAAAAAAGAGGAAGTTGGTGA 1851 41.55 MMNKFKKSEIVVLLGLTILLVITPLLSSSLRPKYLYFIFNLLIIALGVQAGLLNDPPPDHQDKTNKLSLTSPETVASSTETSALKKHRALEKAHSDKISSGNVKMESLKKCPSASSIFYIGEGDSEAEETRGIEDGEEEVVVGGVGNNNGQELFAQAETFIGNFYKQLKMQKEESWKNIHVRWQTMGNWRDGLSNNNNSRVIVDESIEEMEPLELLMGRLVRGEDHTQLQRTGFACHTDLHSKVCLTNNPTRINNTNLEFYISTNNDSQQNNFSPILIHPYARQEDKITLRDVTPLQIIFQPNKTLLPLCQFIHNVPVLIFSTGGFTGNLFHEFDETIIPLFITSYHFQTRVRFLITDHKTWWVQKYKRILSGLSRYNVVNPAEDGSVHCFNGGVIGLKFHNILSLNNTDIPGGYSMSDFRSFLRQTYNLKVHNVSEMSGKKPMVMLISRQTSRRFMNEGEMVEMMREVGFEVMTTTPQRMSNLDKFSSVVNLCSVIIGAHGAGLTNEVFLANGAVVVQVVPFGLDWPSTYFFGKPADEMELQYLEYKIEAKESSLWDKYGENHPVIRDPESIFAQGYFASRAIYIDEQNLKINLTRFRDTMIQVKKLTEEKRGSW* 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22084791 22094773 - Chy6G123610.1 Chy06g01833 229542

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01833 616 Pfam Cotton fibre expressed protein 151 182 IPR008480 -
Chy06g01833 616 MobiDBLite consensus disorder prediction 57 82 - -
Chy06g01833 616 Pfam Glycosyltransferase 61 428 518 IPR007657 GO:0016757
Chy06g01833 616 MobiDBLite consensus disorder prediction 63 82 - -
Chy06g01833 616 PANTHER EGF DOMAIN-SPECIFIC O-LINKED N-ACETYLGLUCOSAMINE TRANSFERASE-LIKE 206 612 - -
Chy06g01833 616 PANTHER GLYCOSYLTRANSFERASE 206 612 IPR007657 GO:0016757
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01833 - - - csv:101206708 855.899
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01833 Chy-Chr6:22084791 Chy08g00184 Chy-Chr8:4293654 6.61E-76 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g553 . . . . . . Bma10g00567 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag1178 . Csa03g00493 . Cme06g02856 . . Bda05g00708 . . Bpe03g00780 . . . . . . . . . Cpe14g00723 . . . . . . . . . . . . . . . Lsi05g00578 . Chy06g01833 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013386 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 2 2 1 0 1 1 0 2 2 1 26