Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01839 ATGAGGAGAGGGAGAGGGCCGGCCGTTGTACCCCCGCCGCGTGAACCACCACCACCAGCAACCACCGGATCCGACCGGAGATATAGAGGTGTTAGAAAAAGGCCATGGGGAAGATTCGCGGCAGAGATCAGAGATCCATGGAAGAAGACGAGAGTCTGGTTAGGCACCTTCGACTCCGCAGAAGACGCCGCCCGTGCTTACGACAGCGCTGCCATAACCCTCCGTGGCTCTAAAGCTAAAACCAATTTTCCCCTTCCCAATCCCACCTCGTTTTTCGATTATCCTCCTCATCCCGTCAACGCCCCAGATCCCATCCCCGATCCCCGATTTCAGATTAGACCTACTTCCAGTAGTTTGAGTTCCACCGTTGAATCCTTCAGCGGTCCTCGGCCTCCCTCCTCCTCCCTTCCCGCCCTTACTACCACTTCTCCCTCTCGTCGTTACCCTCGTACTCCCCCACTTCTCCCCGAGGATTGCCATAGCGATTGCGATTCTTCTTCCTCCGTTATTGACGACGGCGACGACATCGCTTCCTCCCCTGTCGTTCCTCGGAAAAAACCCCCTCTGCCTTTCGATCTCAACATTCCACCTTCCGATCTTTTTGATTTTAGCAGCGATGATCTTCGATGTACCGCGTTGTGCCTTTGA 648 55.09 MRRGRGPAVVPPPREPPPPATTGSDRRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDSAAITLRGSKAKTNFPLPNPTSFFDYPPHPVNAPDPIPDPRFQIRPTSSSLSSTVESFSGPRPPSSSLPALTTTSPSRRYPRTPPLLPEDCHSDCDSSSSVIDDGDDIASSPVVPRKKPPLPFDLNIPPSDLFDFSSDDLRCTALCL* 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22151171 22151818 + Chy6G123670.1 Chy06g01839 229548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01839 215 PIRSF PTI6 134 210 IPR017392 GO:0003700
Chy06g01839 215 PIRSF PTI6 9 90 IPR017392 GO:0003700
Chy06g01839 215 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 23 181 - -
Chy06g01839 215 CDD AP2 27 84 IPR001471 GO:0003700|GO:0006355
Chy06g01839 215 MobiDBLite consensus disorder prediction 1 33 - -
Chy06g01839 215 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Chy06g01839 215 SUPERFAMILY DNA-binding domain 27 85 IPR016177 GO:0003677
Chy06g01839 215 Pfam AP2 domain 27 76 IPR001471 GO:0003700|GO:0006355
Chy06g01839 215 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Chy06g01839 215 MobiDBLite consensus disorder prediction 101 191 - -
Chy06g01839 215 MobiDBLite consensus disorder prediction 111 148 - -
Chy06g01839 215 Gene3D AP2/ERF domain 26 85 IPR036955 GO:0003700|GO:0006355
Chy06g01839 215 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Chy06g01839 215 PRINTS Ethylene responsive element binding protein signature 50 66 IPR001471 GO:0003700|GO:0006355
Chy06g01839 215 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 23 181 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01839 Chy-Chr6:22151171 Chy11g00957 Chy-Chr11:13517880 3.10E-45 dispersed
Chy06g01839 Chy-Chr6:22151171 Chy01g00321 Chy-Chr1:2312842 8.56E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18204 PF00847 AP2 6.30E-14 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01839 K09286 - csv:101219993 321.627