Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01848 ATGGCGGTGGCAGATACACGAATTCCTCTTCAAGGAGAAACCACATGTGGTACCCTACTGCAGAAACTGCAAGAAATTTGGGATGAAGTTGGTGAAACTGATGAGGAACGAGATAAAATGCTGCTTCAGATAGATCAAGAATGTTTGGATGTCTACAAAAGGAAAGTGGAGCTAGCTGATAAGTCAAGGGCTAAACTTTTGCAGTCTTTATCAGATGCAAAGCATGAGCTTTCCAGTCTTCTATCTGCTCTTGGTGAAAAAAGTATTTCTGAATTTCCTGAGAAGGCTTCTGGAACAATCAAGGAACAGCTTGCCGCCATAGCTCCAGCTCTGGAAAAGCTTTGGAAACAGAAAGAGCAGAGGGTTAAGGAATTTTTTGATGTACAATCAGAGATTCAGAAAATATGTGGGGAGATTGCTGGGAGTTTAAACCTTAGCGAGAATCCAGTAGTAGATGAATCTCAACTTTCGGTAGAAAAGCTTGATGAATACCATTGCCAACTTCAGGAACTGCAGAAGGAAAAGAGTGAAAGGTTGCACAAAGTTCTTGACTTTGTGAGCACTGTGCATGATCTGTGTGCTGTCCTTGGAATTGATTTCTTTGCCACTGTAACCGAGGTTCACCCAAGCTTAAATGATGCAACTGGTGTGCAATCTAAAAGCATTAGCAACGATACTTTATCCAAGCTGGCAAAGATGGTCTTAGCTCTGAAAGAAGATAAAAAGCAAAGGCTACATAAGCTTCAAGAATTGGCAACTCAGCTGATTGATCTTTGGAATTTGATGGATACCCCCTCAGAAGAAAGAAGTTTATTTGACCATGTCACGTGTAATATATCAGCATCAGTAGATGAAGTGACTGTCCCAGGGGCTCTTGCTCTTGATTTGATTGAGCAGGCTGAGGTGGAGGTTGAGAGGCTTGATCAACTCAAGGCTAGTAGGATGAAGGAAATTGCTTTCAAGAAACAATCTGAACTTGAAGAGATATTTTCTCACGCTCACATAGAAATAGACCCAGAGGCAGCTCGAGAAAAAATTATGGCACTAATTGATTCTGGTAATGTCGAGCCTGCTGAATTATTGGATGACATGGACGATCAAATAACAAAGGCCAAAGAAGAAGTTCTCAGCAGGAAAGAAATATTAGACAAGGTTGAAAAATGGATGTTAGCTTGTGAAGAAGAGAGCTGGCTGGAAGACTACAATCGGGATGATAATAGGTACAATGCTAGCAGAGGGGCTCATTTGAATCTCAAACGTGCAGAGAAAGCTAGAATTCTGGTTAACAAAATTCCAGCTCTTGTTGACACTTTAATTGCCAAAACTCGGGCTTGGGAGGAAGATCGTGGCATCTCGTTTATTTACGACGGTGTTCCTCTCCTTGCTATGCTAGACGAATACACCATGCTCAGGCATGAAAGAGAGGAAGAAAAACGACGATTGAGGGACCACAAAAAATTCCACGATCAGCAAACCACAGACCCAGAGATCATCACCAATTCAAGGCCTAGCCCTGTTCGAACCATTGGTACAAAGAAGGCAGGGGGGGCTCGTGCGAATGGAGCTGCAAACGGAACACCTAGCAGCAGACGGTTATCGCTTAATCAAAATGGATCTAGATCAATGAACAAAGATAGCAAAAGAGACAGTATGAGACCAATGACACCGGTGAAATACGACGCAATTTCGAAAGATGACTCTGGCTCACACATTTCAGGTACGGAGCCTGTTTCAGCTTCACCATGA 1746 42.67 MAVADTRIPLQGETTCGTLLQKLQEIWDEVGETDEERDKMLLQIDQECLDVYKRKVELADKSRAKLLQSLSDAKHELSSLLSALGEKSISEFPEKASGTIKEQLAAIAPALEKLWKQKEQRVKEFFDVQSEIQKICGEIAGSLNLSENPVVDESQLSVEKLDEYHCQLQELQKEKSERLHKVLDFVSTVHDLCAVLGIDFFATVTEVHPSLNDATGVQSKSISNDTLSKLAKMVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSEERSLFDHVTCNISASVDEVTVPGALALDLIEQAEVEVERLDQLKASRMKEIAFKKQSELEEIFSHAHIEIDPEAAREKIMALIDSGNVEPAELLDDMDDQITKAKEEVLSRKEILDKVEKWMLACEEESWLEDYNRDDNRYNASRGAHLNLKRAEKARILVNKIPALVDTLIAKTRAWEEDRGISFIYDGVPLLAMLDEYTMLRHEREEEKRRLRDHKKFHDQQTTDPEIITNSRPSPVRTIGTKKAGGARANGAANGTPSSRRLSLNQNGSRSMNKDSKRDSMRPMTPVKYDAISKDDSGSHISGTEPVSASP* 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22229237 22233324 + Chy6G123760.1 Chy06g01848 229557

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01848 581 Coils Coil 238 258 - -
Chy06g01848 581 MobiDBLite consensus disorder prediction 493 507 - -
Chy06g01848 581 Pfam Microtubule associated protein (MAP65/ASE1 family) 18 507 - -
Chy06g01848 581 Gene3D - 368 501 - -
Chy06g01848 581 Coils Coil 297 317 - -
Chy06g01848 581 PANTHER PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED 6 581 IPR007145 GO:0000226|GO:0008017
Chy06g01848 581 MobiDBLite consensus disorder prediction 478 492 - -
Chy06g01848 581 MobiDBLite consensus disorder prediction 522 541 - -
Chy06g01848 581 MobiDBLite consensus disorder prediction 478 581 - -
Chy06g01848 581 MobiDBLite consensus disorder prediction 567 581 - -
Chy06g01848 581 PANTHER 65-KDA MICROTUBULE-ASSOCIATED PROTEIN 1 6 581 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01848 K16732 PRC1, ASE1, MAP65; Ase1/PRC1/MAP65 family protein - csv:101217855 1101.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01848 Chy-Chr6:22229237 Chy10g00709 Chy-Chr10:13428674 0 dispersed
Chy06g01848 Chy-Chr6:22229237 Chy03g00680 Chy-Chr3:9360550 4.20E-147 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g576 . Blo03g01459 . . . . . Bma13g01091 Cmo16g00948 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00849 . Bda12g00935 . . . . . . . . Cma16g00913 . Car16g00886 Cpe14g00738 . . . . . . . . . . . . . . . . . Chy06g01848 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003979 3 1 2 4 2 1 2 1 1 1 1 1 1 1 1 2 1 3 1 1 1 1 1 1 1 1 1 3 2 1 44