Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01850 ATGGAGGAAACCGCCCTTGTTGATGTCCAACCCGCTCTCCCCACCTCTGACAAGAGACCCATTGAGATTCATGACGACAATCAACTTGCGGAGCCTCAATCCAGGAAGAAACCTCGGAATGCTTGCGACTTGGGTCCCAATCTCAGAAGGGTAGCTGAGATTGTATTGGTTATGTCGACTATGACGGCTTTGCGTGGTGGTAAGAAGCCCAGTGATGCTGAGGTTGGATTAATGGCTGAAGCTAGGGCTAAGTTGGTTAGGATTTGTGAAGGGTTGGCTCCGAAGGATATTGTGGGAAGGGAGGGTATTAGTTCTTTGATTGAAGATTTGGGGCTCCATGCTAGGGATCAGAAGTTAGGGTTTCGAGGTCCTAGGTTGACGATAGCGGAGAAATTGGCGCAGTCGAAGAAGAAGATGGAAGATTCCAAGAAATATGGCCCACCTCCGGGTTATGGATCCCATACAACCCAAAAAAGTTCCAGTTCATCAGTTGAGAGCCGTGGGCCATTACCTACAGTACGGATGTTTCCCTCAGAAAAATCAGGTCCTGTCCCAGCTTCTGTGGGAGGTACTGCAGGTACTCTGCCTTCAGGTCATGGTTCTGTTGCTGGTCCTACATCTATACAGGTTCAAGCGCAAATACCGAGCAATGAAGTTAAATCACATATTATTTCAAGTGGATATTCTATTGGTCGTCAAGGAATGGATTCTTCTTCACTCTTGCATGGCACTGAAAGACCATTAAATGGAGCATATGGATCTCAAATGCAAGGTAACTCTTTGGCAAATCATCCTCTGGCGAGTGCTCCAACATGGTCTGCTCAAACTCAGTCTGCTTTGACAACTAAAGGTGGGCCAGAGCACAAGTTTCCCAATCATTCTGCTGTTAATGCTCAGGGAACCACAGACTCAAGAGCATTAAGATCGTCTTCTCAAGCTGCAAGGGACCAGAGCTTTAGACCTCCTATTTGTCAAACTGGGACAGGAAATATTACTGGTTTGCAGCCGCCTTTACAGAACATGAATTTTGTGCAAGGACCTTCACTTTCTAATAACCACAATGAAATTGTCAAAATTATTCAGAAGCTCTTACAGCCACAACTGCCTGATCATCCTACTTGGAATCCTCCTTCAAGAGATTACATGAACAAGGCTGTGACTTGCCAAACTTGTCAAGTTACCATTAATGAGATTGATACTGTACTTATATGTGATGCTTGTGAGAAAGGATATCACTTGAAATGTGTACAGTCACCTAATCAGAGAGCAATTCCTAGAGGCGAATGGCACTGCCCAAGATGTTTAACTATAAGCAATGGGAAGCCTTTACCTCCTAAATATGGGCGTGTCATGAGGAGTAACCCGCCACCAAAATTATCAGTCAATACCAGTGGAACTCAGCTACTAGAGAAGAGATCAGGAGCCATAGAACCGAAGGCCAGTGCTGGTCAGTTGAAGTTGGTTTCCAATGGAGGTTCAGATTTGCCAACTCCTCAACCTGCTGACTATGGAAGCAATGCAAATGAATCATCTGGTACCAAAATTTCAAATGTGGAAGAGATTCATGGAAATAATTTTTTACCAATTAGGAAAGACATAGATGAGAAACCAATACCAACTTCACCGACTTCCTTGAATACCCCAGCCAAATCCTTGGGGCTGGTTTGTGAACCCTCTTCTGGTGAGTTATCAAGTGAAACATCTGCTCAGCCCATTAAAAGTTCTCAAGCATCAATAGGTGATGATAAATCCTCAACGAAAGCAGAGCCTCCAGATGAATCCCAAACAACAGCTGACAGTTCTAGTATTCCTAAACCCCCTGACATTCCTCGAATTGTTGATCAGAAAATGGTTTCTGAAGGGCCAGAAATACCCTCCTCAACAGCAAGTGCTCATGATACTTCAAACGTGAAGAAAGATGATCATGAAGTTCTGCAGGAGAATAATGTTGAAAATTTTGAAGCTAGCATCATAAATAGAGAGCAGCCCGGTGCTTCTTCCAATGACTTGCATAATGTTGAATGGATCGGTGACCAATATCAGATTTTAGATATGAGGGCATATTACAAATCCTGTCGAGTTGATGGTGTGACATATAAAGTTGAAGAATTTGCTATTTTTCAATCCAGCAACGGGAAATTGATGCCCTATAGGCTTCATTCCTTCAGCCATGAATATGAAAGTGGGTTGAAATGGGCTATTCTTAAAAAGTGTTACTTTTATGAGGACTTGCCAACGGAAGTTGCCCATCTCCACCAGTGCTCACCTGAAGAACATGAGGTATATACATCCGATGGCTATATTTGTTTAGATCTGGGCTTAATTCGAGGACCATGTGAAGTTCTTTCTGTTGCAAAGTATAAAGAAGAACTTGAAAGACGAAAACAATTGGGTCCTGGGGAAGATAATGGAATAAAGCCAATTTTCTTGTGCAAATGGTTTTATACTGAAGCTAGTAAGGAATTTGTACCTTTTACTGGCGCCATTTGTGAAAACTTCTCAGTGACGCAGAGTCAACCCTTGCAAGAACAAATACAGATTCAACCTTCGCAAGAACAAATACAAAGTCAGCCTTTGCAAGAAGAAATACAGAGTCAACCTTTGCAAGAACAAATACAGAGCCAACCTTTGCAAGAACAAGTTGATGGATGA 2652 42.91 MEETALVDVQPALPTSDKRPIEIHDDNQLAEPQSRKKPRNACDLGPNLRRVAEIVLVMSTMTALRGGKKPSDAEVGLMAEARAKLVRICEGLAPKDIVGREGISSLIEDLGLHARDQKLGFRGPRLTIAEKLAQSKKKMEDSKKYGPPPGYGSHTTQKSSSSSVESRGPLPTVRMFPSEKSGPVPASVGGTAGTLPSGHGSVAGPTSIQVQAQIPSNEVKSHIISSGYSIGRQGMDSSSLLHGTERPLNGAYGSQMQGNSLANHPLASAPTWSAQTQSALTTKGGPEHKFPNHSAVNAQGTTDSRALRSSSQAARDQSFRPPICQTGTGNITGLQPPLQNMNFVQGPSLSNNHNEIVKIIQKLLQPQLPDHPTWNPPSRDYMNKAVTCQTCQVTINEIDTVLICDACEKGYHLKCVQSPNQRAIPRGEWHCPRCLTISNGKPLPPKYGRVMRSNPPPKLSVNTSGTQLLEKRSGAIEPKASAGQLKLVSNGGSDLPTPQPADYGSNANESSGTKISNVEEIHGNNFLPIRKDIDEKPIPTSPTSLNTPAKSLGLVCEPSSGELSSETSAQPIKSSQASIGDDKSSTKAEPPDESQTTADSSSIPKPPDIPRIVDQKMVSEGPEIPSSTASAHDTSNVKKDDHEVLQENNVENFEASIINREQPGASSNDLHNVEWIGDQYQILDMRAYYKSCRVDGVTYKVEEFAIFQSSNGKLMPYRLHSFSHEYESGLKWAILKKCYFYEDLPTEVAHLHQCSPEEHEVYTSDGYICLDLGLIRGPCEVLSVAKYKEELERRKQLGPGEDNGIKPIFLCKWFYTEASKEFVPFTGAICENFSVTQSQPLQEQIQIQPSQEQIQSQPLQEEIQSQPLQEQIQSQPLQEQVDG* 884
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22250440 22257051 + Chy6G123780.1 Chy06g01850 229559

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01850 883 MobiDBLite consensus disorder prediction 245 330 - -
Chy06g01850 883 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 376 449 IPR013083 -
Chy06g01850 883 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 8 826 - -
Chy06g01850 883 MobiDBLite consensus disorder prediction 294 330 - -
Chy06g01850 883 MobiDBLite consensus disorder prediction 486 519 - -
Chy06g01850 883 CDD BAH 696 826 - -
Chy06g01850 883 ProSiteProfiles Zinc finger PHD-type profile. 385 437 IPR019787 -
Chy06g01850 883 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 8 826 - -
Chy06g01850 883 MobiDBLite consensus disorder prediction 152 168 - -
Chy06g01850 883 MobiDBLite consensus disorder prediction 558 583 - -
Chy06g01850 883 MobiDBLite consensus disorder prediction 245 283 - -
Chy06g01850 883 MobiDBLite consensus disorder prediction 1 43 - -
Chy06g01850 883 ProSiteProfiles BAH domain profile. 697 826 IPR001025 GO:0003682
Chy06g01850 883 MobiDBLite consensus disorder prediction 18 38 - -
Chy06g01850 883 MobiDBLite consensus disorder prediction 621 640 - -
Chy06g01850 883 Pfam PHD-finger 388 435 IPR019787 -
Chy06g01850 883 ProSitePatterns Zinc finger PHD-type signature. 388 434 IPR019786 -
Chy06g01850 883 SMART PHD_3 387 435 IPR001965 -
Chy06g01850 883 MobiDBLite consensus disorder prediction 133 205 - -
Chy06g01850 883 Gene3D - 676 883 IPR043151 -
Chy06g01850 883 MobiDBLite consensus disorder prediction 848 883 - -
Chy06g01850 883 MobiDBLite consensus disorder prediction 532 610 - -
Chy06g01850 883 SUPERFAMILY FYVE/PHD zinc finger 378 444 IPR011011 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01850 - - - csv:101222588 1636.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01850 Chy-Chr6:22250440 Chy09g01455 Chy-Chr9:16046015 2.19E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g580 . . . . . . . . Cmo16g00950 . . . . . . . . . . . . . . . Cla10g00470 Cam10g0457 Cec10g0479 Cco10g0466 Clacu10g0477 Cmu10g1306 Cre10g0711 . . Cone14ag1182 Cone15ag1199 . Csa03g00472 . Cme06g02834 . Blo10g00851 . Bda12g00937 . . . . Sed08g2972 . . . . . . . . Bhi11g00572 Tan01g1753 Cmetu06g0787 . Hepe06g0022 Mch10g1340 . . . . . . . . Lsi05g00560 . Chy06g01850 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008595 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18205 PF00628 PHD 2.70E-08 CL0390 Chy TR