Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01863 ATGGCACCTTCTGATTTATGGATAAAGGAATATAATGAAGCTTCTAAGCTTGGTGATAATATCAATGACATGATTTCTGAAAGGAGTTCCTTTCCTGCAACTGGACCAGAATCCCAACGTCATGCTTCGGCCATTCGGAGGAAGATCACAATTTTGGGGACTAAAGTTGATGGCTTACAGTCTCTTTTGTTGAAACTTCCTGTAAAGCAGCCCCTGTCTGAAAAGGAGATAAATCGACATACAGACATGCTTGTTCAGATGAGATCAAAAGTAAAGCAGATGGCCTCAACGTTGGACATGTCAAACTTTGCTAACCGAGACAGTTTACTTGGCCCAGAGATGAAATCGGCGGATGTAATGAGCAAGACAGCTGAACTAGACAATCAAGGACTTGTTGGTTTTCAAAGACGAATCATGAAGGAGCAAGATGAAGGTCTTGAAAAGCTGGAGGAGACTATTACAAGTACAAAACATATTGCATTAGCAGTCAATGAAGAACTCGATCTTCACACTCGCCTAATTGATGACTTAGATCAACATGTTGATGTTACAGACTCTCAATTAGCGAGGGTGCAGAAGAGGTTGGGTATAATGAACAAGCGAGCAAAGGGGAGCTGCTCTTGCTTTGGAATGCTTCTGTCTGTGGTTGGTATTGTGGTTCTCATCACTGTCATATGGCTGCTCGTCCAATACTTCCGGCCAGCTCTGAACCGGAGAACGACCGGCCGGTGCTTTCCGCCATTGCTGCTGACCTTCTCCTCCTTTCAGAGCATTGGGATTTCCAACCTTTCCCCTGAGGTTGCTCTTGCACTCACTCCCGATGTCGAGTACCGGGTCCGTGAAATCATGCAGGAGGCAGTTAAATGCATGCGTCATTCAAAGCGAACTGTTCTCTCTTCCAGTGATGTTGATAATGCACTTAAATTAAGAAACTTAGAGCCAATATATGGCTTTGCTGCATGCGATAGCTTGCGGTTCAAAAGAGCTGTTGGACACAAGGATCTCTTTTACATTGATGACAAGGATGTGGAGTTAAATAATGTTATCGAGTCACCTTTAGCAAAAGCAGCGGTTGATACATCAGTTGCTACTCACTGGCTGGCAGTTGAAGGTGTTCAGCCTGCAGTTCCAGAGAGCTTGCTGACTGAAGAACCCCATGATGGAAAGAAATCCGACTTGAAGGAGGAAGAACTTCCTTATGACTCAAAAGCACCTACTAAGCATGTGATTTCAAGGGATCTTCAGCTTTACTTTGAGAAAATAACGGGTCTTATCTTGAACAAGTCTGGGTCTATTCTCTTTAGAGAAGCTTTAAGGAGCCTGGCAGTTGACTCAGGAATTCAGCCTTTGCTTCCATACTTCACTTGCTTCATTGCCGATGAGGTTTCGAAAAATCTATGTAATTATCAACTCTTGATTGCTTTGATGAGGATGGTCTGGTGCCTTCTTCGAAATCCACAGATTCATATGGCACCTTATTTACACCAATTGATGCCATCCATCATTACCTGCCTTGTTGCCAAACAATTAGGTAAAAGATTGTCTGACAATCATTGGGAGCTTAGAGACTTAGCAGCAAGCCTGGTTTCTTTGATATGCAAAAGATTTGGGCATGTATATCACAATATTCAACCTCGTGTTACAAAGACTCTTCTCCATGTTTTCTTGGACCCCTCAAAATTATTGCCTCAGCATTATGGCGCAGTTCGGGGGTTAGCAGATCTTGGTCCTGATGTGGTTCGCCAGTTTATACTACCAAATCTTGAACCTTATATGCAATATTTAGAGATGGAGAAGCAAAAGAATGAAATGAGGAGGCATGAAGCTTGGCAAGTTCATAGGACGTTACTGGATGCAGCTGGTAAATGTATGCATGGTTGGTTGAAGGTTTTTCCGCTCTCTCTATCTCCACCAATGCGTAGTACTTCGAAGATAAATGCAAATATCAATGGGAAAGTTGTGAAGACAATTTCAAATAAACGCAAAGCCATTTTGGACAACACAGTGCAGCAACCAGCACTAAAAAAGATGGCAACAGATAGCACATTGGGCGCAATACCAATGAACTCCATGATGGTCGATATGCAAGGAGCCACAACAGGGCTTCCAACACCACTTGGAGGTTCAAACATCAGTGTTGCTCGAAATTTCCCAAATGAAACGAGGCCAGGTAGGGAAGGGGAGCTAGGATTTAAAGGTTCTACTGCTCTTGCTCTAGCATGGAAAGAGGATTTGGATGCTGGGCCATTGATAACTTCGCTTTTTCAACTTTTTGGGGAAGATCTGTTCTCCTTCATCCCAAAACCCGAGCTATCTTTCTTTTTGTGA 2328 43.21 MAPSDLWIKEYNEASKLGDNINDMISERSSFPATGPESQRHASAIRRKITILGTKVDGLQSLLLKLPVKQPLSEKEINRHTDMLVQMRSKVKQMASTLDMSNFANRDSLLGPEMKSADVMSKTAELDNQGLVGFQRRIMKEQDEGLEKLEETITSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSQLARVQKRLGIMNKRAKGSCSCFGMLLSVVGIVVLITVIWLLVQYFRPALNRRTTGRCFPPLLLTFSSFQSIGISNLSPEVALALTPDVEYRVREIMQEAVKCMRHSKRTVLSSSDVDNALKLRNLEPIYGFAACDSLRFKRAVGHKDLFYIDDKDVELNNVIESPLAKAAVDTSVATHWLAVEGVQPAVPESLLTEEPHDGKKSDLKEEELPYDSKAPTKHVISRDLQLYFEKITGLILNKSGSILFREALRSLAVDSGIQPLLPYFTCFIADEVSKNLCNYQLLIALMRMVWCLLRNPQIHMAPYLHQLMPSIITCLVAKQLGKRLSDNHWELRDLAASLVSLICKRFGHVYHNIQPRVTKTLLHVFLDPSKLLPQHYGAVRGLADLGPDVVRQFILPNLEPYMQYLEMEKQKNEMRRHEAWQVHRTLLDAAGKCMHGWLKVFPLSLSPPMRSTSKINANINGKVVKTISNKRKAILDNTVQQPALKKMATDSTLGAIPMNSMMVDMQGATTGLPTPLGGSNISVARNFPNETRPGREGELGFKGSTALALAWKEDLDAGPLITSLFQLFGEDLFSFIPKPELSFFL* 776
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22511495 22519423 - Chy6G123910.1 Chy06g01863 229572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01863 775 CDD SNARE_Qc 139 195 - -
Chy06g01863 775 MobiDBLite consensus disorder prediction 382 398 - -
Chy06g01863 775 SUPERFAMILY ARM repeat 438 624 IPR016024 -
Chy06g01863 775 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 256 775 - -
Chy06g01863 775 Gene3D Histone, subunit A 253 309 IPR009072 GO:0046982
Chy06g01863 775 SMART TAF_cls 251 310 IPR004823 -
Chy06g01863 775 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 256 775 IPR037796 GO:0000124|GO:0005669|GO:0006367|GO:0016251|GO:0046695
Chy06g01863 775 SUPERFAMILY Histone-fold 253 318 IPR009072 GO:0046982
Chy06g01863 775 Gene3D - 138 200 - -
Chy06g01863 775 SUPERFAMILY SNARE fusion complex 127 198 - -
Chy06g01863 775 SMART tSNARE_6 131 198 IPR000727 -
Chy06g01863 775 Pfam TAF6 C-terminal HEAT repeat domain 501 588 IPR011442 GO:0006367
Chy06g01863 775 Pfam TATA box binding protein associated factor (TAF) 256 308 IPR004823 -
Chy06g01863 775 CDD TAF6C 407 619 IPR011442 GO:0006367
Chy06g01863 775 Gene3D - 406 607 IPR046344 GO:0006367
Chy06g01863 775 Pfam SNARE domain 173 224 IPR000727 -
Chy06g01863 775 MobiDBLite consensus disorder prediction 378 398 - -
Chy06g01863 775 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 136 198 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00481 Chy-Chr1:3468789 Chy06g01863 Chy-Chr6:22511495 0 dispersed
Chy01g01059 Chy-Chr1:11777833 Chy06g01863 Chy-Chr6:22511495 9.92E-117 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01863 K03131 - csv:101204807 1012.68