Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01869 ATGCATTTTGGAGCCAAATCTGATGCAATAACGGATAATAGTAAGGCATTAAGTAGTGCATGGAGTGAAGCTTGTAGAAATAATGGAGGTGGCATTGTTTTAATACCAGCAAAAGGAAGGTTCTTGGTTTTGCCATTGCTTCTCCAAGGTCCATGCCATGGCTTCATTCGTATACAACTCGATGGTGAATTATTGGCTCCCCTCAACGAGCATTTCGCGACTGGTGACTATTGGCTTAGTATCGATCAAGTCAACAACCTTTTCATTGATGGTTTAGGTCGCTTGAATGGTCGCGGTTCTACTGCTTGGCCTTCCACCTCACATAATCGTCTTGTCTCTATGAGACTCAATGGTATCAACAATGCAAAAATTACAAATATAAAATCCTACAATAGCAAGCTCTTCCATTTCGCTATGCATGGATGTCGTGATGTCACGTTTGATCACGTTACAGTGATAGCTCCAGCAAACAGTCCCAATACAGATGGAATCCACATTTCATCATCAAGTGGTATCAACATCATGCATTCGACAATCGGTACTGGAGATGATTGCATCTCCTTGGGTCCTGGAAGCAAATTCATCAACATAACTAACGTTCAATGTGGTCCTGGACATGGAATCAGCATTGGTAGCCTTGGAAAGTACCCAAACGAAGAAGATGTCTTCGAAGTCACAGTAAGAGACTCCACATTCATTGGCACATCCAACGGTGTGAGGATCAAAACATGGTCATCTTCGTATTCTAGCATGGTTAGCAAGGTCACATTTCTCAATCTCCAAATGAACAATGTCAAAAATCCTATCATCATCGATCAAAACTATTGTCCAGACTCTTGCGGTTCACATAAAATGATGAGTAAATCAATGGTGCAGATTAAAGATGTGAGATATGAAGGCATAAGGGGGAGTTCAAATACACAAGTGGCTGTAGATTTTGAATGCAGCCAAGTTGTTCCATGTCAAGGCATAGTGTTACAAGACATTAACCTTCCTTTTAATGGTGGTGGGAGGACAACTTCCAATTGTCATAATTTAAGAAGTTTCTTGCTAGACCTCAACATGAAGGCCTTGGAGCTGTTGTTAGAAGAAGCATCGGCAGTGAGTGCACCTGGTGGATTTCCTGATCATCCACATAGAGGATTTGAAACTGTCACTTACATGTTACAGGGAGCAATGATACATGAAGATTTTGAAGGGCATAAAGGAAGAATTGAAGTTGGTGACTTGCAATGGATGACTGCTGGCAAAGGCATTGTTCATTCTGAAATGCCTTCTTCCATTGGCACCCAACGTGGCTTACAACTTTGGATCAATCTTTCCTCCAAACACAAAACGATTGAACCGAGGTATCAAGAAATACACAACGAGAACATAGTGGAAGCTACAAGAGAAGGAGTAAAAGTGAGAGTGATAGCAGGTGAAGCCTTGGGATTAAAATCCCCAATCTACACCAAAACTCCAACCATGTACTTGGACTTCACTCTCGCCCCGGGATCCGGCATCGAGCAGTCAATCCCGACGGGGTGGAATGCGTTCGTGTACGTGCTAGAAGGCGATGGCGGAGTATTCGGAAGCATGAAGTCGATGCCAACGGTTACACCACATCACCTTCTTTTGTTAGGGAATGGGGATGGGTTGGAGGTTTGGAACAAGTCGTCCTCCAAAACTCTAAGGTTCATATTGGTTGGAGGTGAGCCATTGAATGAGAGTGTTGTGCAGTTGGGGCCATTTGTGATGAACACTCAAGAAGAGATTGACCAAACCATTGAGGATTTTGAGAATTGTACAAATGGCTTTGAGAGAGCAAGGCATTGGAAGAGTTCACAATTACCTTAA 1839 42.85 MHFGAKSDAITDNSKALSSAWSEACRNNGGGIVLIPAKGRFLVLPLLLQGPCHGFIRIQLDGELLAPLNEHFATGDYWLSIDQVNNLFIDGLGRLNGRGSTAWPSTSHNRLVSMRLNGINNAKITNIKSYNSKLFHFAMHGCRDVTFDHVTVIAPANSPNTDGIHISSSSGINIMHSTIGTGDDCISLGPGSKFINITNVQCGPGHGISIGSLGKYPNEEDVFEVTVRDSTFIGTSNGVRIKTWSSSYSSMVSKVTFLNLQMNNVKNPIIIDQNYCPDSCGSHKMMSKSMVQIKDVRYEGIRGSSNTQVAVDFECSQVVPCQGIVLQDINLPFNGGGRTTSNCHNLRSFLLDLNMKALELLLEEASAVSAPGGFPDHPHRGFETVTYMLQGAMIHEDFEGHKGRIEVGDLQWMTAGKGIVHSEMPSSIGTQRGLQLWINLSSKHKTIEPRYQEIHNENIVEATREGVKVRVIAGEALGLKSPIYTKTPTMYLDFTLAPGSGIEQSIPTGWNAFVYVLEGDGGVFGSMKSMPTVTPHHLLLLGNGDGLEVWNKSSSKTLRFILVGGEPLNESVVQLGPFVMNTQEEIDQTIEDFENCTNGFERARHWKSSQLP* 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22566950 22574064 + Chy6G123970.1 Chy06g01869 229578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01869 612 CDD cupin_pirin_C 488 567 - -
Chy06g01869 612 Pfam Pirin C-terminal cupin domain 491 599 IPR008778 -
Chy06g01869 612 Pfam Glycosyl hydrolases family 28 32 347 IPR000743 GO:0004650|GO:0005975
Chy06g01869 612 Gene3D - 1 351 IPR012334 -
Chy06g01869 612 Pfam Pirin 340 438 IPR003829 -
Chy06g01869 612 SUPERFAMILY Pectin lyase-like 2 359 IPR011050 -
Chy06g01869 612 ProSitePatterns Polygalacturonase active site. 199 212 IPR000743 GO:0004650|GO:0005975
Chy06g01869 612 Gene3D Jelly Rolls 361 594 IPR014710 -
Chy06g01869 612 PANTHER PIRIN-RELATED 356 609 IPR012093 -
Chy06g01869 612 PANTHER - 356 609 - -
Chy06g01869 612 SUPERFAMILY RmlC-like cupins 363 609 IPR011051 -
Chy06g01869 612 Gene3D Jelly Rolls 460 568 IPR014710 -
Chy06g01869 612 SMART pbh1 169 190 IPR006626 -
Chy06g01869 612 SMART pbh1 252 273 IPR006626 -
Chy06g01869 612 SMART pbh1 142 168 IPR006626 -
Chy06g01869 612 SMART pbh1 192 212 IPR006626 -
Chy06g01869 612 SMART pbh1 222 243 IPR006626 -
Chy06g01869 612 CDD cupin_pirin_N 360 440 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01869 Chy-Chr6:22566950 Chy01g00503 Chy-Chr1:3644027 4.60E-93 dispersed
Chy06g01868 Chy-Chr6:22561881 Chy06g01869 Chy-Chr6:22566950 1.08E-167 tandem
Chy01g01076 Chy-Chr1:12142885 Chy06g01869 Chy-Chr6:22566950 1.80E-119 transposed
Chy07g01410 Chy-Chr7:18629634 Chy06g01869 Chy-Chr6:22566950 9.26E-110 transposed
Chy01g00501 Chy-Chr1:3637288 Chy06g01869 Chy-Chr6:22566950 1.52E-91 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01869 K06911 K01213 csv:101204320 681.404