Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01876 ATGGACCCCACTGATTCCGACCTCCCCGATCCATCTAATGCCTCCTCCGGTGCTAAGTACAAGCTCTTGTCTCCCGCCAAGCTTCCGATCTCCAGGTCCCCTTGCATTACCATCCCTCCTGGCCTCAGTCCCACTTCATTTCTCGACTCTCCTGTTCTTCTTACCAACTTGAAGGTAGAACCTTCTCCGACTACTGGGTCCTTTACCAAGCTTCCAATGGCACATGACTCTTCTGGCTCAGCGATTTATCCAATGACCAGCATGGCTTTCTCAAATACTAATGCCTCGGATGAAGGAAGATCCAACTACTTTGAGTTCAAACCATATGTTGGACCAAATATGGTTCCTGCAGATTTGAGTCATAGGAAAGGTGAACAATCTTCTGAAGTTCAAGGTCAACCTCAATCTTTTACTGCTCCACCCATGACTAAAATCGAGATCAGTGTCATGTCAAATGATTTGAGTCGATCAACCCAGATGGACACACATACAGTTGCCTCGGGGGTTAGTGTTCCCGAAGCCAATGGAGACGATATCAACCATAGTTTGAACACAAATAGCAGGGTTCAGGCTCCACAATCTGATCCAAAAGGCAGTGGCATTCCAGTAGTTTCAGATAGGTTATCTGATGATGGATATAACTGGCGGAAGTATGGACAGAAGCATGTTAAAGGGAGTGAATTTCCGCGTAGCTATTATAAATGTACCCATCCTAACTGTGAAGTGAAAAAGCTCTTTGAACGCTCCCATGATGGGCAAATAACTGATATTATCTATAAAGGTACCCATGATCATCCTAAGCCTCAGCCAAGCCGGCGATATTCTGCCAGTGCTTCTATGAATGTTCAAGAAGATGGGACTGATAAGCCTTCATCTCTACCTGGCCAAGATGACAGGTCTTGCAGCATGTATGCTCAGACAATGCATACCATTGAGCCAAATGGAACTACAGATCCATCCATGCCTGCAAATGATAGGATCACCGAAGGTGCAGGAACAACTCTGCCATGCAAGAATCACGATGAGGTTGATGATGATGACATATACTTGAAACGGAGGAAAATGGAACTTGGTGGTTTTGATGTCTGCCCAATGGTTAAACCAATCAGGGAACCGCGTGTTGTGGTTCAAACTCTAAGTGAGGTTGATATACTGGATGATGGGTATCGCTGGCGGAAATATGGTCAGAAGGTAGTGAGAGGAAATCCCAACCCGAGGAGTTATTACAAATGCACAAATGTTGGATGCCCTGTTCGAAAACATGTTGAAAGAGCATCCCATGACCCAAAAGCTGTTATAACTACATATGAAGGGAAACATAATCACGATGTTCCCACTGCAAAAACTAGTAGCCATGATGTCACAGGCCCATCGACAATTCCATCATCAAGGTATAGACTCGAGGAGAGTGACACCATAAGCCTTGATCTCGGCGTTGGCATTGGCACAGGTGGTGAGAATAGACCAAATGAATACAGGCAGGCATTGCATTCACAACTTGTTGAAAACCGAGCTCCAAGTGGGAATTTCAACTTCGAAGTAGTTCAAGAGAGCTCGGCACCAACCTATTTCGGTGTGCTCAATAGAAGTGTTATAAATTAG 1602 45.07 MDPTDSDLPDPSNASSGAKYKLLSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKVEPSPTTGSFTKLPMAHDSSGSAIYPMTSMAFSNTNASDEGRSNYFEFKPYVGPNMVPADLSHRKGEQSSEVQGQPQSFTAPPMTKIEISVMSNDLSRSTQMDTHTVASGVSVPEANGDDINHSLNTNSRVQAPQSDPKGSGIPVVSDRLSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITDIIYKGTHDHPKPQPSRRYSASASMNVQEDGTDKPSSLPGQDDRSCSMYAQTMHTIEPNGTTDPSMPANDRITEGAGTTLPCKNHDEVDDDDIYLKRRKMELGGFDVCPMVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNVGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAKTSSHDVTGPSTIPSSRYRLEESDTISLDLGVGIGTGGENRPNEYRQALHSQLVENRAPSGNFNFEVVQESSAPTYFGVLNRSVIN* 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22629322 22636030 + Chy6G124040.1 Chy06g01876 229585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01876 533 SMART WRKY_cls 385 444 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy06g01876 533 SMART WRKY_cls 209 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy06g01876 533 MobiDBLite consensus disorder prediction 126 141 - -
Chy06g01876 533 ProSiteProfiles WRKY domain profile. 380 445 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy06g01876 533 MobiDBLite consensus disorder prediction 177 194 - -
Chy06g01876 533 MobiDBLite consensus disorder prediction 173 205 - -
Chy06g01876 533 SUPERFAMILY WRKY DNA-binding domain 377 445 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy06g01876 533 MobiDBLite consensus disorder prediction 272 299 - -
Chy06g01876 533 Gene3D WRKY domain 372 438 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy06g01876 533 ProSiteProfiles WRKY domain profile. 204 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy06g01876 533 PANTHER WRKY TRANSCRIPTION FACTOR 20 ISOFORM X1-RELATED 10 527 - -
Chy06g01876 533 SUPERFAMILY WRKY DNA-binding domain 206 268 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy06g01876 533 Pfam WRKY DNA -binding domain 386 442 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy06g01876 533 Pfam WRKY DNA -binding domain 210 266 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy06g01876 533 MobiDBLite consensus disorder prediction 259 299 - -
Chy06g01876 533 MobiDBLite consensus disorder prediction 119 141 - -
Chy06g01876 533 Gene3D WRKY domain 203 269 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy06g01876 533 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 10 527 IPR044810 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02124 Chy-Chr2:25534349 Chy06g01876 Chy-Chr6:22629322 1.22E-14 dispersed
Chy06g01876 Chy-Chr6:22629322 Chy09g00217 Chy-Chr9:1819693 1.23E-17 dispersed
Chy02g01672 Chy-Chr2:16368321 Chy06g01876 Chy-Chr6:22629322 6.89E-90 transposed
Chy06g01930 Chy-Chr6:23221339 Chy06g01876 Chy-Chr6:22629322 4.08E-97 transposed
Chy01g00511 Chy-Chr1:3690925 Chy06g01876 Chy-Chr6:22629322 1.86E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18207 PF03106 WRKY 3.00E-25 CL0274 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01876 - - csv:101219838 1069.3