Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01879 ATGGAGTTTTCGGCTCACACTAGGACTGTATTCCATCGAATCAATCAAATCGATCCCGACAATGTCATGAAAATCATTGGATTCTTACTTCTCCATGATAATGGGGATCAAGAAATGGCGAGGCTAGCACTAGCAAATGAGAGCCATATTGAAAAAGTGGTTATGCTAGCCAAGACTGAGCTGCATCAACTGCGATCGATGCCGGTCCCGGTATCACCATTAGCCATTAGAAACAGGCAGCCTTCAACTTCCCCTCCTGGTTGGGAGCAACAACAGCTTACTAACAAGCATACTCCTGATTACATATCATTAGGCTATCAAGATTCTTCTATGTATGACTTACAAAATGCCTCTAACTTATTTTGTTTAGAGGACCATATGGAACAGTCGAACTCGGGTCTCTCTAGCTTTGATTGTAGCTATGCTGAAAATATGCTCAATAGCTTTAGTACTAGGAACACCCGCCATTACTCGAATGTGCCGGATTTTCAGCCTAGGACATGTCACTACTACAACAAAGGATTTTGCAAGCATGGAAATAGCTGTAGGTATCTCCATAGCAACCTCGTGCCTGGGAGCCTTTCTCATCTGTATAATACCAATTCTAATGTCAATGATGATCATGTTTTCCGACCTGGTTCTCTGGAGAGGTTGGAGTTTGAAATTGTTGAGCTTCTTAAATCAAGAAGAGGCAGTCCTATTTCAATTGCTTCATTGCCAATGATTTACTATGAAAAGTATGGAAAAGTTCTTCAAGCTGAAGGTTACCTAACTGAGAGCCAAAGGCATGGTAAGTCAGGTTTTAGCTTGACGAAGCTCCTCACTCGATTGAAAAGCAGCATCCAAGTGATCGACAGGCCTCATGGACAGCATGCAGTCATTTTGGCAGAAGATGCTCCGAAATTCATGGACCATAGGAAGGATAGGAATGATCCCGGGCCAATTGTTAGCAGTGCCCGACAGATATATATGACATTTCCAGCTGACAGTACCTTCACAGAGGAAGATGTTTCTGATTACTTCAGTGTCCACTATGGAATGGTTGAAGATGTAAGAATACCCTGCCAACAAAGAAGGATGTTCGGGTTTGTCACATTTCACAGTATGGAGACTGTGAAACTAATCTTGTCTGATGATAGTGAGCATTTGATTTGCGGGGCTCGGGTTCTCGTGAAGCCTTATAGAGAAAAGTCCAAGCTGTTGGAAAGGAAATACCAAGAAAGAGTTGAACAACAACAGCAAGATTACTTTGCTTCACACTACAACAACCTTGAATCCGAGCAGCTTCACTCAATTGCTAGAGGCTATGATTTCCCCCCCACAATGCTGAGACTAAGGATGGAAGAGCAGCAACAGCAACAACGTGCACTCGAGAGGAGCCTTTCTGAGATGACCTTAGTTCAGAAATCGGTCGTGAATCAGCCCTACTTTAGCTATCAAATGAACGAACTGAAAGTTCCAGTCCCAGAAGCTACAGAAAGTTTTGACCATTTGATGGATATTCTCAACGTTCTGAATAGTGGCTCTAACTCTAGCTCGAGCTCTACTGATGATAATAAGCAACCCCACCCTCAAAACGTGACAGATTGGAATCACATCGAACTCAACCTCGAGAGGTTCTCCATTTCTCAAGCATCTAGTTCTTCTAATCCGGTACAGTGGCTATGGCTTGTCGATTCAAGTGAATTCATTGTCTGA 1698 43.05 MEFSAHTRTVFHRINQIDPDNVMKIIGFLLLHDNGDQEMARLALANESHIEKVVMLAKTELHQLRSMPVPVSPLAIRNRQPSTSPPGWEQQQLTNKHTPDYISLGYQDSSMYDLQNASNLFCLEDHMEQSNSGLSSFDCSYAENMLNSFSTRNTRHYSNVPDFQPRTCHYYNKGFCKHGNSCRYLHSNLVPGSLSHLYNTNSNVNDDHVFRPGSLERLEFEIVELLKSRRGSPISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLLTRLKSSIQVIDRPHGQHAVILAEDAPKFMDHRKDRNDPGPIVSSARQIYMTFPADSTFTEEDVSDYFSVHYGMVEDVRIPCQQRRMFGFVTFHSMETVKLILSDDSEHLICGARVLVKPYREKSKLLERKYQERVEQQQQDYFASHYNNLESEQLHSIARGYDFPPTMLRLRMEEQQQQQRALERSLSEMTLVQKSVVNQPYFSYQMNELKVPVPEATESFDHLMDILNVLNSGSNSSSSSTDDNKQPHPQNVTDWNHIELNLERFSISQASSSSNPVQWLWLVDSSEFIV* 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22654914 22658327 - Chy6G124070.1 Chy06g01879 229588

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01879 565 Coils Coil 447 467 - -
Chy06g01879 565 SMART rrm1_1 321 392 IPR000504 GO:0003723
Chy06g01879 565 MobiDBLite consensus disorder prediction 506 527 - -
Chy06g01879 565 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 165 187 IPR000571 GO:0046872
Chy06g01879 565 Pfam OST-HTH/LOTUS domain 214 292 IPR025605 -
Chy06g01879 565 SUPERFAMILY RNA-binding domain, RBD 331 419 IPR035979 GO:0003676
Chy06g01879 565 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 320 396 IPR000504 GO:0003723
Chy06g01879 565 ProSiteProfiles OST-type HTH domain profile. 214 297 IPR025605 -
Chy06g01879 565 ProSiteProfiles Zinc finger C3H1-type profile. 162 189 IPR000571 GO:0046872
Chy06g01879 565 SUPERFAMILY CCCH zinc finger 165 187 IPR036855 GO:0046872
Chy06g01879 565 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 524 - -
Chy06g01879 565 Gene3D - 327 400 IPR012677 -
Chy06g01879 565 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 524 - -
Chy06g01879 565 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 331 374 IPR000504 GO:0003723
Chy06g01879 565 Gene3D - 159 232 - -
Chy06g01879 565 SMART c3hfinal6 162 188 IPR000571 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01879 - - - csv:101203347 1023.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01879 Chy-Chr6:22654914 Chy10g00637 Chy-Chr10:12918240 7.02E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g619 . . . . Bpe09g00132 . . Bma13g01110 Cmo16g00984 . . . . . . . . . . . . . . . Cla10g00430 Cam10g0428 Cec10g0450 Cco10g0440 Clacu10g0435 Cmu10g1266 Cre10g0683 . . Cone14ag1209 Cone15ag1226 . Csa03g00438 . Cme06g02784 . . . Bda12g00954 . . . . Sed08g2938 . . . Cma16g00946 . Car16g00909 Cpe14g00769 . Bhi11g00494 Tan01g1811 . . . . . . . . . . . . Lsi05g00520 . Chy06g01879 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002118 2 2 1 2 1 1 3 1 1 1 1 1 3 1 1 3 1 4 3 1 1 2 2 2 2 2 1 11 6 2 65