Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01888 ATGCCCTTCTCATCTGTTGTAAAAGTTAAAGGGCAGGGATTTGACTGGACACCGGCTACAACAGGATTGAACATGATGCTGACCCCAAACAAGCCAACCTCCATCAACAACACTCCGAACACCAATCACCATCTCTCGAACGGAGCAACTGCCACTGGCAACTCCTCAGCTACCAGTCCCCTCTCGGTCGCCGCCACTGCCAACAATAATGAGCAAAACCAACAATGCGTGGTGCGAGAACAAGACCAATACATGCCGATTGCTAATGTGATACGAATCATGAGGCGGATTTTACCCTCCCATGCAAAGATATCCGACGACGCCAAAGAGACCATCCAAGAATGTGTGTCGGAGTACATTAGCTTCATCACTGGCGAGGCGAACGAACGATGCCAACGGGAGCAACGCAAGACAGTGACAGCAGAGGATGTCCTTTGGGCTATGGGAAAGCTAGGTTTCGACGACTACATAGAACCGCTAACTGTTTTCCTTAACCGCTATCGTGAGTCAGAGAGTGACCGAATTCGCACTGAACCAATCTTGAGGCGCAATGTGGATTATGGGCCACAAGTGGGGATGATATCACCATATGGGCAGGCGTTTCAGATAGGGCACGTCCCTGCAGGGATGTTCGATGCAATGGGTGGATACTATGGTGGAGGCGGGAGCGGTGGGCCGAGTGCAGGGAACGGCAGCCAGCTTTGA 705 51.77 MPFSSVVKVKGQGFDWTPATTGLNMMLTPNKPTSINNTPNTNHHLSNGATATGNSSATSPLSVAATANNNEQNQQCVVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGGSGGPSAGNGSQL* 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22731154 22734043 - Chy6G124160.1 Chy06g01888 229597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01888 234 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-9 51 189 - -
Chy06g01888 234 MobiDBLite consensus disorder prediction 31 60 - -
Chy06g01888 234 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 51 189 IPR027113 GO:0001228|GO:0006355|GO:0016602
Chy06g01888 234 PRINTS CCAAT-binding transcription factor subunit A signature 112 130 - -
Chy06g01888 234 PRINTS CCAAT-binding transcription factor subunit A signature 150 168 - -
Chy06g01888 234 PRINTS CCAAT-binding transcription factor subunit A signature 131 149 - -
Chy06g01888 234 SUPERFAMILY Histone-fold 81 174 IPR009072 GO:0046982
Chy06g01888 234 Gene3D Histone, subunit A 64 185 IPR009072 GO:0046982
Chy06g01888 234 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 85 148 IPR003958 -
Chy06g01888 234 ProSitePatterns NF-YB/HAP3 subunit signature. 115 131 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02392 Chy-Chr2:27702604 Chy06g01888 Chy-Chr6:22731154 1.30E-15 dispersed
Chy06g01888 Chy-Chr6:22731154 Chy07g01303 Chy-Chr7:17697258 1.28E-44 dispersed
Chy06g01888 Chy-Chr6:22731154 Chy04g02095 Chy-Chr4:26324861 3.41E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18209 PF00808 CBFD_NFYB_HMF 3.00E-25 CL0012 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01888 K08065 - csv:116402762 402.519