Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01890 ATGACTCCCAAAATTATCCTTCTTTTCACCCTTTTTCTCCTTATCTTCACTACCCCAAGAACAGAGTGTATCGGCTTCGATTTTACTTCTTTCAATATCAGAAACCTGACTCTCCTTGGCGATTCCCATCTCCGAGATGGCGTCATTGGCCTCACTAAAGAGCTCGGAGTTCCTTCTTCAAGCGCCGGCACCGTAATTTACAACAAACCCATCGGATTTTACGACGCCGATGCTAACTTTACTGCTTCTTTCTCTACAAGATTCTCTTTCTCTATCACCAACATCAACCCCACTTCCTACGGCGACGGTCTTTCCTTTTTCCTCTCCCCCGATAATCAGACTCTCGGCAGTCCAGGCGGGTATTTGGGTCTCGTCAATTCTTCCCAATTGACCAAGAACAAGTTTCTCGCGGTTGAATTTGATACACGGCTTGATTCTGTCTTCAAGGATCCGAATGCCCATCATGTCGGCTTCGACATTGAGAGCTTGATTTCGATCAAGACGGCTAATCCTGCTAGTCAAGGTGTTAATCTCAAGAGTGGGAAGTCGATTACGGCTTGGATTGAGTACAAGAATGAGGAATGTAGGTTGAGGGTTTTCTTGAGTAATTCTAGTTTGAAACCTTCTAAGGCGCTTCTTGACGTCGGTGTCGATCTTTCGAGCTATCTTAAGGAGGTTATGTTTGTTGGGTTTTCGGGGTCGACTGAAGGGAGTACTGAGCTTCATTTGATTGAGAATTGGACTTTTAATACTTCTGGGTTCGTTTCTGCTAGGCCTAGATTTAACCCTCATAATGTTTCTGATAGCTCTGTGATTGTTTCTCCTAATATTTCTTTATCTGATTCTGGCAACGGTCGTCACAGTAGGCTCGGATTAGGTCTTGGGATCGCCGGACCGGCTTTCTTTTGTGCTGTGATCGCTGTTTTTGGTTTCTTTTCACTTATGAAATGGAGGAGGATTAGGACTCAGAAAAGCATCAAGGCAGAGCTTTTGACAGGTCCTAGAGAGTTTAGTTACAAAGAACTAAAGACAGCCACAAAAGGATTTCATTCAAGTAGGATCATTGGCAACGGGGCTTTTGGGACTGTCTACAAAGCTTTTTGCATCTCATCCGGAAACATTTCTGCGGTTAAAAGATCGAAGCATTCCCACGAAGGGAAGACCGAGTTCCTAGCCGAGTTGTCGATCATAGCTCGGTTGAGGCACAAGAATTTGGTTCAGCTCCAAGGTTGGTGTGTTGAGAAAGGTGAACTGCTTCTTGTTTACGACTTTATGCCGAACGGGAGCCTCGATAAGCTGCTTTACCAGGAATCTAGTGAAGCTAGCTTGTTAAACTGGTCTCACAGGTACAATATTGCTGTTGGATTGGCGTCTGTGCTGACATATCTACATCAGGAATGTGAGCAGCAAGTCATCCACAGAGATATAAAGACTGGTAACGTACTACTCGATGGGAACTTCAATGCGAGATTGGGCGACTTTGGATTGGCAAAGCTCATGGATCATGACAAGAGCCCGGTTTCAACTCTAACGGCCGGAACAATGGGATATCTTGCACCTGAGTATCTTCAATATGGGAAAGCAACTGAGAAAACCGACGTGTTCAGCTACGGTGTGGTTATCCTTGAAGTAGCGTGTGGGAGGAGGCCGATTGAAAGAGAACCAGGTACTCAAAAGATGGTCAACCTGGTAGATTGGGTTTGGGGATTGCATTCTCAAGGCAAGATCATTGAAGCAGCTGATAGCAGGTTGAATGGGGAGTTCAAGGAAGAAGAAATGAAGAAGCTGTTACTTGTTGGATTAAGCTGTGCAAACCCAGACAGCTCGACAAGACCTTCAATGAGGAAGGTCCTACAGATTCTCAACAATGAGGCAGAGCCAGCGTTGGTGCCTAAAATGAAGCCTAGTCTTACATTTTCTTGTGGCTTTTCACTGACCGTGGATGACATTATACTAGAGGAAGAAGGTGGAGGAGAGTGGGAAACTTCAAGGCCAACCATTGTCCAAATAGACTGA 2016 45.14 MTPKIILLFTLFLLIFTTPRTECIGFDFTSFNIRNLTLLGDSHLRDGVIGLTKELGVPSSSAGTVIYNKPIGFYDADANFTASFSTRFSFSITNINPTSYGDGLSFFLSPDNQTLGSPGGYLGLVNSSQLTKNKFLAVEFDTRLDSVFKDPNAHHVGFDIESLISIKTANPASQGVNLKSGKSITAWIEYKNEECRLRVFLSNSSLKPSKALLDVGVDLSSYLKEVMFVGFSGSTEGSTELHLIENWTFNTSGFVSARPRFNPHNVSDSSVIVSPNISLSDSGNGRHSRLGLGLGIAGPAFFCAVIAVFGFFSLMKWRRIRTQKSIKAELLTGPREFSYKELKTATKGFHSSRIIGNGAFGTVYKAFCISSGNISAVKRSKHSHEGKTEFLAELSIIARLRHKNLVQLQGWCVEKGELLLVYDFMPNGSLDKLLYQESSEASLLNWSHRYNIAVGLASVLTYLHQECEQQVIHRDIKTGNVLLDGNFNARLGDFGLAKLMDHDKSPVSTLTAGTMGYLAPEYLQYGKATEKTDVFSYGVVILEVACGRRPIEREPGTQKMVNLVDWVWGLHSQGKIIEAADSRLNGEFKEEEMKKLLLVGLSCANPDSSTRPSMRKVLQILNNEAEPALVPKMKPSLTFSCGFSLTVDDIILEEEGGGEWETSRPTIVQID* 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22748430 22750445 + Chy6G124180.1 Chy06g01890 229599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01890 671 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.1 21 641 - -
Chy06g01890 671 Pfam Protein kinase domain 349 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy06g01890 671 Gene3D Phosphorylase Kinase; domain 1 312 424 - -
Chy06g01890 671 ProSitePatterns Protein kinases ATP-binding region signature. 355 378 IPR017441 GO:0005524
Chy06g01890 671 ProSiteProfiles Protein kinase domain profile. 349 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy06g01890 671 SMART serkin_6 349 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy06g01890 671 Gene3D - 22 264 - -
Chy06g01890 671 SUPERFAMILY Protein kinase-like (PK-like) 332 643 IPR011009 -
Chy06g01890 671 CDD lectin_legume_LecRK_Arcelin_ConA 26 253 IPR001220 GO:0030246
Chy06g01890 671 Pfam Legume lectin domain 25 254 IPR001220 GO:0030246
Chy06g01890 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Chy06g01890 671 PANTHER - 21 641 - -
Chy06g01890 671 CDD STKc_IRAK 355 623 - -
Chy06g01890 671 Gene3D Transferase(Phosphotransferase) domain 1 425 641 - -
Chy06g01890 671 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 256 IPR013320 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00557 Chy-Chr1:3992404 Chy06g01890 Chy-Chr6:22748430 5.34E-133 dispersed
Chy03g00544 Chy-Chr3:7656342 Chy06g01890 Chy-Chr6:22748430 1.72E-13 dispersed
Chy06g01890 Chy-Chr6:22748430 Chy11g00474 Chy-Chr11:5054605 2.70E-122 dispersed
Chy12g00930 Chy-Chr12:14686138 Chy06g01890 Chy-Chr6:22748430 3.18E-109 dispersed
Chy06g01890 Chy-Chr6:22748430 Chy04g02165 Chy-Chr4:26757558 8.82E-119 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71345 PF00069 Pkinase 2.30E-51 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01890 - - csv:101209797 1289.63