Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01895 ATGGGTGTGAAGGGCCATCAAATTGCGACTCATCATTCACCTAATGCCAAAGTAGAAGTAGGAGAGATTGACACTAGTGCACCTTTCCAGTCTGTTAAAGATGCAGTCAACTTGTTTGGTGAAGGTGCTTTTTCGGGAGAACGACTAATTGTGAGGAAGGCGAAACAACCTCACTCTGCAGAGAAAGTGTTTGCAAAAGAGACTCAACTCCACTTGGCTGAAAAGGAACTGAGCAAATTAAAGGATCAGCTAAAGAATGCTGAAACTACCAAATCTGAAGCGCTCGTTGAGCTTGAAAGTACTAAAAGAGCTGTTGATGACCTAACCAAGAAGCTGCAATTGCTGAGGGAATCAAAAGAATCAGCCATCAAGGATTCGGAAGTTGCAAAGGCTCAAGCAAAGCAGTTTGAGGAGGCAAATGGAAGTAATCACTCTGGAAATGATTATGGTTGGAAACAAGACTTGGAAACTAGACGAGATCAGTACATGGTAGTGATCGGAGAACTAGATGCTGCAAAGCAAGAATTGAGGAAAATTCGTCAAGATTCTGATGCATCTTTGGAAGCGAAAGTAGCTGCATTGAAACAGGTGGCGGAGGCTGATGAATCAGTCAAAACACACAAGCTGAAAGCAAATGAACTTTCTAAGGAAATCTTGGCTGCACGGGAATCCATTGAAAAGCTCAAGCTGGCATCCCTGCAAGCACATAAAGAGCAAGAAAAAATATTTGTGGAGAAAGACATCCAGAGGCAGTCTTATAAAGCGGCTCTTGAGGAGTCCGCAAAAAAACTGTTTTCTTTGCAGAAGGAAATTGACCCTGATCTCACCAGGAATCTCGAATTGCAGTTGAGCGAGACGATGAATGAAATTGGGAAACTGCAGAAACAAATGGAAGATAAAAAAGCGTTGGATATAGATTCAGTGAAGAATGTCACCTCAGAGCTTGATGATGCAAAAGAGTCCCTACAAAAAGCAGCTGAAGAAGAAAGATCTCTCCGTAACCTGGTTGAAGCTCTTAAGTTGGAACTGGAAAATGTGAGGAAAGAGCATTCTGAACTCAAGGAAAAAGAAGCTGAAGCAGAATCTACTGCTGGGAATTTGCATGTCAAGCTCCGGAAGACCAAATCTGAACTCGAAGCATACCTCACAGAAGAATCTAAAGCAAGAGGTGCTTGTGAAGATATGCTCTCAACTCTTAACCAACTGTCGTCAGAAAGTGAAAATGCTAGACAGGGAGCAGAAGAGATGACAAATAAAGCAGAGGATTTGAGGAAGGAAGCAGAAGGCACCAGAATAGAATTGGAAGATGCTGAGAAGCAGCTAAGAGTTGCACTAGATGAAGCTGAAGAAGCAAAAGCAGCTGAAGCTAGGGCCCTTGATCAGATTAAAGTACTATCTGAAAGAACCAATGCTGCACGAGCTTCAACATCTGAGTCGGGGGCTAACATCACTATCTCCATGGAAGAGTTTGAGTCCCTAAGCCGTAAAGTTGAGGAGTCTGACACATTAGCAGAAATGAAAGTAGCTGCTGCATTAGCTCAAGTTGAAGCTGTGAAGGCTAGTGAAAATGAAATTCTAAAAAAGCTAGAAGCATCCCAGAAGGAAATTGAGGATATGAAGACTGCAACTGAGGAAGCTTCAAAGAAAGCCAAAATGGCAGAAGCAGCTAAGAAAGCTGTGGAAGGAGAACTAAAAAGATGGCGTGAGCGAGAGCAGAAAAAAGCGGTTGAAGCAGCATCAAGAATTTTGGCCGAAACAGAGGTGTCTTTGGAATCGTCTCCAAGCCACAATAGGATTCAAAAGCAGAGCACAACAGTGAAAAGAGTTGAGGCCAAAAAATTGGAGAAAGATAAAACCTTCTCAAAGAAGGTACTTCTACCAAACCTTAGCGGCTTATTTGTTAGGAAAAAGAACCAGGTTGATGGTGGATCGCCCTCCTACTTGCCTGGTGAGAAATCTGTGTGA 1965 42.8 MGVKGHQIATHHSPNAKVEVGEIDTSAPFQSVKDAVNLFGEGAFSGERLIVRKAKQPHSAEKVFAKETQLHLAEKELSKLKDQLKNAETTKSEALVELESTKRAVDDLTKKLQLLRESKESAIKDSEVAKAQAKQFEEANGSNHSGNDYGWKQDLETRRDQYMVVIGELDAAKQELRKIRQDSDASLEAKVAALKQVAEADESVKTHKLKANELSKEILAARESIEKLKLASLQAHKEQEKIFVEKDIQRQSYKAALEESAKKLFSLQKEIDPDLTRNLELQLSETMNEIGKLQKQMEDKKALDIDSVKNVTSELDDAKESLQKAAEEERSLRNLVEALKLELENVRKEHSELKEKEAEAESTAGNLHVKLRKTKSELEAYLTEESKARGACEDMLSTLNQLSSESENARQGAEEMTNKAEDLRKEAEGTRIELEDAEKQLRVALDEAEEAKAAEARALDQIKVLSERTNAARASTSESGANITISMEEFESLSRKVEESDTLAEMKVAAALAQVEAVKASENEILKKLEASQKEIEDMKTATEEASKKAKMAEAAKKAVEGELKRWREREQKKAVEAASRILAETEVSLESSPSHNRIQKQSTTVKRVEAKKLEKDKTFSKKVLLPNLSGLFVRKKNQVDGGSPSYLPGEKSV* 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22801337 22803442 + Chy6G124230.1 Chy06g01895 229604

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01895 654 PANTHER BNAC03G14000D PROTEIN 16 642 - -
Chy06g01895 654 Pfam Weak chloroplast movement under blue light 22 573 IPR008545 -
Chy06g01895 654 Coils Coil 308 363 - -
Chy06g01895 654 MobiDBLite consensus disorder prediction 402 431 - -
Chy06g01895 654 Coils Coil 197 231 - -
Chy06g01895 654 Coils Coil 63 125 - -
Chy06g01895 654 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 16 642 - -
Chy06g01895 654 Coils Coil 512 570 - -
Chy06g01895 654 MobiDBLite consensus disorder prediction 1 22 - -
Chy06g01895 654 Coils Coil 399 468 - -
Chy06g01895 654 Coils Coil 276 303 - -
Chy06g01895 654 Coils Coil 169 189 - -
Chy06g01895 654 MobiDBLite consensus disorder prediction 412 431 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01895 - - - csv:101202792 1145.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00082 Chy-Chr3:846215 Chy06g01895 Chy-Chr6:22801337 4.24E-27 dispersed
Chy03g01541 Chy-Chr3:17602695 Chy06g01895 Chy-Chr6:22801337 1.64E-17 dispersed
Chy06g01895 Chy-Chr6:22801337 Chy12g00639 Chy-Chr12:9143606 3.57E-120 dispersed
Chy06g01895 Chy-Chr6:22801337 Chy07g00127 Chy-Chr7:1098209 1.24E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g687 . . . . Bpe09g00119 . . . . Cmo06g00678 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1256 Cone15ag1278 . Csa03g00417 . . . Blo10g00872 . Bda12g00972 . . . . . . . . . . . Cpe14g00781 . Bhi11g00468 . . . . . . . . . . . . . . . Chy06g01895 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005145 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 6 2 1 1 1 1 1 1 1 0 4 2 1 41