Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01899 ATGGGGTTTCTTGATTCTCTGTTTGGAAAAGATTCAAGAAAGTTTATCAAAAGAAAAGATAGCGATGCTGGTGAAGCAGGCCGAGCGCTCGAAGAAATCAGAGGTTCGCTTTATAATGAACTACGAACTTCCGATGGGGCGAAACGGCAACAACAGCGATATTGCGGGCCTGTTGTGGCAATGACATTCAATTTCATGGTTGCTGTTGGAATTATAATGGCGAACAAATTAGTAATGGGAAGAGTTGGATTTAACTTTCCAATATTTCTCACATTAATACATTACACTATTGCATGGTTTTTACTAGCAATTTTCAAGGCACTTTCTTTGCTTCCTGTTTCTCCTCCTACCAAAACCACTCCCTTCTCTTCTCTTTTCTCCTTAGGTGTTGTCATGGCTTTTGCTTCAGGTCTTGCCAATACAAGTCTAAAGCATAACAGTGTTGGATTCTACCAGATGGCTAAAATTGCAGTAACTCCCACAATTGTTTTTTCAGAGTTCATACTCTTCAAGAAAACCATTTCTTTCAAAAAGGTATTGGCTTTGTCTGTCGTCTCCATCGGTGTTGCGATTGCAACCGTAACAGATTTAGAGTTTAACCTATTTGGTGCCTTGATCGCAATTGCTTGGATAATCCCAAGTGCCATAAACAAAATACTTTGGTCGAATCTGCAACAACAAGCGAGTTGGACGGCATTAGCGTTGATGTGGAAAACTACACCAATTACAATATTTTTCTTACTTGCTCTCATGCCTTGGCTGGATCCACCAGGAGTTTTATCTTTTAAATGGGATCTTGGTAGTTCAACTGCTATTTTGATATCAGCTCTTCTTGGTTTTCTCTTGCAATGGTCTGGAGCTTTGGCACTTGGTGCAACCTCTGCAACATCTCATGTTGTTTTGGGACAGTTCAAGACTTGTGTGATTCTGCTTGGAAGCTATTTTGTTTTTGGGTCCGATCCCGGGTTCATCAGCATTTGCGGAGCGGTTACAGCACTCGGTGGAATGTCTGCTTACACATCCCTTAACCTGCAGCAACAACTTGACAACAAGCAACAACTTCCAAAGCATAACTTGGCGATACCGAAACCCGAAAACAGCGTGGTTGTAGAAGATGCTCCGAAGTCAGATGTACAAAATTCTGATGTTGCTGTATAG 1158 41.45 MGFLDSLFGKDSRKFIKRKDSDAGEAGRALEEIRGSLYNELRTSDGAKRQQQRYCGPVVAMTFNFMVAVGIIMANKLVMGRVGFNFPIFLTLIHYTIAWFLLAIFKALSLLPVSPPTKTTPFSSLFSLGVVMAFASGLANTSLKHNSVGFYQMAKIAVTPTIVFSEFILFKKTISFKKVLALSVVSIGVAIATVTDLEFNLFGALIAIAWIIPSAINKILWSNLQQQASWTALALMWKTTPITIFFLLALMPWLDPPGVLSFKWDLGSSTAILISALLGFLLQWSGALALGATSATSHVVLGQFKTCVILLGSYFVFGSDPGFISICGAVTALGGMSAYTSLNLQQQLDNKQQLPKHNLAIPKPENSVVVEDAPKSDVQNSDVAV* 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22843939 22846560 - Chy6G124270.1 Chy06g01899 229608

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01899 385 PANTHER OS06G0297600 PROTEIN 16 362 - -
Chy06g01899 385 PANTHER SOLUTE CARRIER FAMILY 35 16 362 - -
Chy06g01899 385 Pfam Triose-phosphate Transporter family 62 339 IPR004853 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01899 - - - csv:101203997 738.413
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02265 Chy-Chr2:26729769 Chy06g01899 Chy-Chr6:22843939 5.88E-176 dispersed
Chy06g01899 Chy-Chr6:22843939 Chy11g00814 Chy-Chr11:11676707 1.76E-36 dispersed
Chy06g01899 Chy-Chr6:22843939 Chy11g00741 Chy-Chr11:10086977 5.36E-31 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g708 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00413 . Cme06g02761 . Blo10g00874 . . . . . . . . . . . . . Cpe14g00778 . Bhi11g00458 . . . . . . . . . . . . . . . Chy06g01899 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001987 2 5 2 0 1 2 3 2 2 2 2 2 3 2 2 2 2 3 3 2 2 2 2 2 1 2 1 4 4 2 66