Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01900 ATGAATCTTCTCTTCTCCTTCCTCTTCCTCCTCCTCCTCCTCCTCTTCCCATCTCTCTTCATTGCCCAAACCACCACCAATTCTCCTGCCCCAGCCCCGACTACACTGGCTCTCGACTCGACCCAACTCAATCTCACGCACATCCTCTCCACCCATGGATGCTCCGCATTTGCCCTATCCCTCCTAAGATCCACATCGGCGGAGAAAGCCTTCAACGACGTAGTCGAGGGTGGCTTGACCGTTTTCTGCCCAAACGATGATGTTTGGAGCGAGTTTTCATCTAAGTTCAAAAACCTAACTCCACCCGCTAAAACCTCCCTCCTTGAATTCCACGGTGTCCCAATTTACATGCCGTTGCCGGTTCTGAAGTCGAATAATGGTGACACCAATACACTGGCCACCGACGGTGCTGCTAGATTCGACTTCACGGTACAGAACGAGGGTGAGGATGTGACTGTTAAAACCAGCATTACGACGGCTAAGGTGGATGGGGCTGGTGTTTTTGATGAGGATCCATTGGTTGTTTATTTGATAGATATAGTTTTGGAGCCGGAAGAGTTGTTTACTGCGGACGCGGTGGCTCCGCCAAAGGGGGGATCGGATGTGGGAGCGGCTCCATCGTCGGATTCGCCGGCAGAATCTCCAGAAGAATCTCTGGCGGATCAAAATGCTGATGGCAACTCTGGGGTTAGAGTGGAGGGTGGAGATCAGTTTCGTTTCATGGCTGTAGCTTTATGTGCATGGATGGGATTTTCACTGCTAAGTCTTAAGAACGAGAAGGAAAACGGCAAAAATACAACCGGAGCAATGGAGGAATCTCAGGAAATTCTTCTCAATTCTCTCCAAAAATCAGGTGTTTCAATCCCACCAGACCTTTCCTCGATTCGGAACTTATCCCCTCCCATCTTCTTCTCCATCTGTGCTCAAGTTTTGAATCGAATACATCCCCAAACTGAAACCCCCTTCTCCACTTCTCTTCCGGACTCTGTCGCCGATCAATTCAAGGTATCTTCTGAAATCGCTTCCGCCATTAAGGATCTGGGTTTCATCGGAGATATTAGCTTCCACAAGTTCTTGTATCCATCTGAAGAGGACTTGTACAAGCTGATAAGATTCTTGGTGGAGAGGCTTCCTGAAGCTTCAGATGGAAAATCTAAGGTTTTGGAAGATGGTGATGGTAGGAAAGAAACAAAAGCCAACACTTCCAAATGCTACTATGTGGAGAACCAATCAAACAAGATCGATACTGACGATTCTGTTTCTACCCATCAGAAGGTTGAGAACAAACTTGCTGATCTCAGTATTGTTGCTGAAGGGACAAAATCTCCAGATTCCATCGTTGATAGATTCTCTGATTTCCATCTCGACCGAAAAAGTTCGGGTGAAGCAGCTATGGTCGATAATCTTGTTAACGCTCCCAAGGATCAGTCTGAGGTTTCTGGAAATGAATCAGTTGAACTGCAGGAGAATAATAGACACGAAGTTGGTACTTACATTCAGAAGACCTTTGAAGATCAAGAGATCGGACCATTGGAAGAGGTCACTACAAATGCTTCTGAATTAAAGCATTTTCAAGTGGAGTTGGAAAGGTTGAAGGCAGTGACCAGAATTGTATTTGATGACAACCATTCGATTGAATTTCATCTTCAGCAGCTGGAGGAGCAAATAAATTCTAGAAAACTGGATCTTCTTGAAATGAAGTCACAGTGGGATGCAGAGAGGGAGCTTTTAGAAATTAAAAGGCGAAGTCTACAAGAATCACTATGTGCAAGTAATCCAAAGGCTCAAGAAAAGCTGCAAAAATTGAGGGAGTTTGAATCGGAAAAGAAGCTCATTGAGTTGGAAATCAGGAGGCGGGAGGAAGAAAATTCTAATATCGCAATAGATCTTAAGAAGCAGCCCAAGCAATTATCGAGACGATCCTATATCAATAGAGTAAAGGAGATCACAAAAAACAGTCGGAAACAAGACGCTGACATTGATCGAATCCTTAAAGAAACTAGAGAGCTTCAGCTAGAAAGTAACAATATTCAAGAACGCCTCCATAGAACCTATGCAGTAGTGGATGAGCTAGTTCTCAGGGAAGCAAAAAAAGACGACACAGGCAAACAAGCACACAAGCTTTTAACTAATATCCATGAGAATTTCGGCGAGATCTCGAACAAAATCCTCTCAACTGATAGACTAAGAAGAGAAACTGCAGAATATGAGAAGAAGATAGCGGCCTCGGCATCCCGAAGCTTAAATTTTAACAAACTACAAGCTGATCTGGATGCTATCAGGAGAGAAAATAGTCACCTGGAGCAACATCTATGCCATAAAAAAACCATTGACGAAGTGTAG 2343 44.52 MNLLFSFLFLLLLLLFPSLFIAQTTTNSPAPAPTTLALDSTQLNLTHILSTHGCSAFALSLLRSTSAEKAFNDVVEGGLTVFCPNDDVWSEFSSKFKNLTPPAKTSLLEFHGVPIYMPLPVLKSNNGDTNTLATDGAARFDFTVQNEGEDVTVKTSITTAKVDGAGVFDEDPLVVYLIDIVLEPEELFTADAVAPPKGGSDVGAAPSSDSPAESPEESLADQNADGNSGVRVEGGDQFRFMAVALCAWMGFSLLSLKNEKENGKNTTGAMEESQEILLNSLQKSGVSIPPDLSSIRNLSPPIFFSICAQVLNRIHPQTETPFSTSLPDSVADQFKVSSEIASAIKDLGFIGDISFHKFLYPSEEDLYKLIRFLVERLPEASDGKSKVLEDGDGRKETKANTSKCYYVENQSNKIDTDDSVSTHQKVENKLADLSIVAEGTKSPDSIVDRFSDFHLDRKSSGEAAMVDNLVNAPKDQSEVSGNESVELQENNRHEVGTYIQKTFEDQEIGPLEEVTTNASELKHFQVELERLKAVTRIVFDDNHSIEFHLQQLEEQINSRKLDLLEMKSQWDAERELLEIKRRSLQESLCASNPKAQEKLQKLREFESEKKLIELEIRRREEENSNIAIDLKKQPKQLSRRSYINRVKEITKNSRKQDADIDRILKETRELQLESNNIQERLHRTYAVVDELVLREAKKDDTGKQAHKLLTNIHENFGEISNKILSTDRLRRETAEYEKKIAASASRSLNFNKLQADLDAIRRENSHLEQHLCHKKTIDEV* 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22848802 22854193 - Chy6G124280.1 Chy06g01900 229609

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01900 780 Coils Coil 595 622 - -
Chy06g01900 780 ProSiteProfiles FAS1/BIgH3 domain profile. 42 182 IPR000782 -
Chy06g01900 780 SUPERFAMILY FAS1 domain 41 185 IPR036378 -
Chy06g01900 780 MobiDBLite consensus disorder prediction 211 225 - -
Chy06g01900 780 Coils Coil 549 569 - -
Chy06g01900 780 Coils Coil 660 680 - -
Chy06g01900 780 Pfam Fasciclin domain 59 184 IPR000782 -
Chy06g01900 780 PANTHER JM1 PROTEIN 453 773 IPR008530 -
Chy06g01900 780 PANTHER JM1 PROTEIN 270 389 IPR008530 -
Chy06g01900 780 SMART fasc_3 80 185 IPR000782 -
Chy06g01900 780 Coils Coil 750 770 - -
Chy06g01900 780 MobiDBLite consensus disorder prediction 192 230 - -
Chy06g01900 780 Gene3D FAS1 domain 22 185 IPR036378 -
Chy06g01900 780 Pfam Coiled-coil domain-containing protein 22 422 742 IPR008530 -
Chy06g01900 780 Pfam Coiled-coil domain-containing protein 22 270 385 IPR008530 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01900 K23343 CCDC22; coiled-coil domain-containing protein 22 - csv:101210296 946.421
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01900 Chy-Chr6:22848802 Chy11g01990 Chy-Chr11:25811985 7.31E-23 dispersed
Chy01g00533 Chy-Chr1:3789733 Chy06g01900 Chy-Chr6:22848802 1.85E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g709 . . . . Bpe09g00115 . . Bma13g01126 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00412 . Cme06g02760 . . . Bda12g00977 . . . . . . . . . . . Cpe14g00777 . Bhi11g00457 . . . . . . . . . . . . . . . Chy06g01900 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009968 1 5 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 33