Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01902 ATGGCGGACTCCGACAACGACTCCGGCGGTGGTTACCAGAAATCCCCATCTCCACGTGAACACGACAGACTCCTCCCGATCGCTAACGTCGGCCGGATCATGAAGAAAGCTCTCCCTGGCAACGCCAAGATCTCAAAAGACGCCAAAGAAACCGTTCAAGAATGCGTCTCCGAGTTCATCAGCTTCGTCACCGGTGAAGCATCCGACAAGTGCCACAACGAGAAACGAAAAACGATCAACGGCGACGATTTGCTCTGGGCCATGGCTACCTTAGGGTTCGAAGACTATGTGGATCCTCTCAAGCTTTATCTCCAACGGTTTCGAGAAATTGAAGGGGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCTCCGCCGCGAACTCCGCCGGAGCTGGGAATAGTGGGTTTTTCGACGGCGGTGGGGAATTTGGGGGTGCGGGTGGGGGTGGGGGTGGGATGGGGATGGGAATGACGACGACGATGCCTCCAAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTAGTACTACCGGTGGGCCCAGAGAGAAATCCCCCGCCAATAGCATGGCCAACTTTGCTTTGTCTATTACTCTTCTCTTTTTGTTTTCGTCATTTATTGGCCTCGTTTTCGCTTACGATTCCCCTGCCGCCTCCCCAAAACCTCCTAAAACGCCTCATTCTCCTTCTCCGGCGCATTCTCCTGTTGTTTCGCCGCCGACTCACACTGTATCTCCGACTGCTTCTCCACCGGTCATAACTCCAGCAATTTCTCCGGCATTGGCTACCCCACCATCTGTAGCGCCCTCGAAGGCTCCGGCAGCGGTACCTATTTCTTCGCCGAGTGAAAATTCTCCGCTTTCGTCGCCGCCGTCTCCTCTCCCTTTCGATGCTTCTCCGGTTGGGGCTCCAGTGGAACCAGAAATCCCGGCAAATCCGATTTCTGGAGGGTCTCCGGTGGGGACGCCGTCGATATTTCCGTCGAGCAGTAGCCCACCGATGGCTACTCCGACAAGCTTAGCACCGGAAACGGCGGAGAGGCCTGGAAACGACGCATCGGCGTCAGGAAAGTACAAGATCGGGGTGGAGGTTATTTTGAGTGGGCTTTCTATTTGGGCTGCTTGGGCCTTTTGA 1146 55.67 MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASRDSASSAANSAGAGNSGFFDGGGEFGGAGGGGGGMGMGMTTTMPPNVYGSNGPRWDGPGFSTTGGPREKSPANSMANFALSITLLFLFSSFIGLVFAYDSPAASPKPPKTPHSPSPAHSPVVSPPTHTVSPTASPPVITPAISPALATPPSVAPSKAPAAVPISSPSENSPLSSPPSPLPFDASPVGAPVEPEIPANPISGGSPVGTPSIFPSSSSPPMATPTSLAPETAERPGNDASASGKYKIGVEVILSGLSIWAAWAF* 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22863372 22867128 - Chy6G124300.1 Chy06g01902 229611

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01902 381 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634|GO:0006355|GO:0043565
Chy06g01902 381 MobiDBLite consensus disorder prediction 321 342 - -
Chy06g01902 381 MobiDBLite consensus disorder prediction 221 360 - -
Chy06g01902 381 MobiDBLite consensus disorder prediction 223 240 - -
Chy06g01902 381 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 158 IPR027113 GO:0001228|GO:0006355|GO:0016602
Chy06g01902 381 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 158 - -
Chy06g01902 381 MobiDBLite consensus disorder prediction 1 24 - -
Chy06g01902 381 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Chy06g01902 381 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Chy06g01902 381 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Chy06g01902 381 SUPERFAMILY Histone-fold 22 123 IPR009072 GO:0046982
Chy06g01902 381 MobiDBLite consensus disorder prediction 163 190 - -
Chy06g01902 381 Gene3D Histone, subunit A 11 134 IPR009072 GO:0046982
Chy06g01902 381 MobiDBLite consensus disorder prediction 288 304 - -
Chy06g01902 381 MobiDBLite consensus disorder prediction 241 255 - -
Chy06g01902 381 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01902 K08065 NFYB, HAP3; nuclear transcription Y subunit beta - csv:101204640 298.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01662 Chy-Chr1:22570705 Chy06g01902 Chy-Chr6:22863372 1.78E-46 dispersed
Chy06g01902 Chy-Chr6:22863372 Chy07g01303 Chy-Chr7:17697258 2.85E-55 dispersed
Chy06g01902 Chy-Chr6:22863372 Chy04g02095 Chy-Chr4:26324861 3.98E-49 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy06g01888 . 34 174 CCAAT-HAP3 Transcription Factor Family AT5G47670 68.3 6.5e-49 191.0
Chy06g01888 . 58 196 CCAAT-HAP3 Transcription Factor Family AT1G21970 67.3 1.3e-49 193.4
Chy07g01303 . 11 138 CCAAT-HAP3 Transcription Factor Family AT1G21970 53.8 9.0e-38 154.1
Chy06g01902 . 1 120 CCAAT-HAP3 Transcription Factor Family AT4G14540 80.2 3.5e-49 191.4
Chy07g01303 . 29 135 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.1 7.2e-47 183.7
Chy04g02095 . 980 1082 CCAAT-HAP3 Transcription Factor Family AT4G14540 82.5 3.9e-45 177.9
Chy10g00622 . 25 159 CCAAT-HAP3 Transcription Factor Family AT4G14540 59.3 9.4e-39 156.8
Chy04g02095 . 959 1073 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 2.8e-48 188.3
Chy10g00622 . 1 144 CCAAT-HAP3 Transcription Factor Family AT2G38880 64.6 4.1e-44 174.5
Chy06g01902 . 1 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 71.2 8.7e-42 166.8
Chy07g01303 . 16 122 CCAAT-HAP3 Transcription Factor Family AT2G38880 73.8 2.5e-41 165.2
Chy01g01662 . 44 139 CCAAT-HAP3 Transcription Factor Family AT2G47810 81.3 2.9e-40 161.8
Chy06g01902 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 76.0 1.4e-39 159.5
Chy07g01303 . 32 140 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.9 6.1e-38 154.1
Chy04g02095 . 959 1132 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.6 1.2e-63 239.6
Chy10g00622 . 7 193 CCAAT-HAP3 Transcription Factor Family AT2G37060 61.3 5.7e-50 194.1
Chy07g01303 . 31 136 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.6 4.9e-41 164.5
Chy06g01902 . 6 113 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.5 6.3e-41 164.1
Chy07g01303 . 19 134 CCAAT-HAP3 Transcription Factor Family AT2G13570 74.4 1.2e-44 176.8
Chy04g02095 . 965 1083 CCAAT-HAP3 Transcription Factor Family AT2G13570 68.5 5.8e-44 174.5
Chy06g01902 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 80.2 2.1e-41 166.0
Chy06g01902 . 1 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 81.5 4.8e-50 194.5
Chy07g01303 . 27 134 CCAAT-HAP3 Transcription Factor Family AT5G47640 78.7 6.1e-45 177.6
Chy04g02095 . 969 1087 CCAAT-HAP3 Transcription Factor Family AT5G47640 70.6 5.1e-44 174.5
Chy10g00622 . 14 164 CCAAT-HAP3 Transcription Factor Family AT5G47640 54.8 1.0e-39 160.2
Chy04g02095 . 970 1132 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.4 1.5e-61 232.6
Chy10g00622 . 12 192 CCAAT-HAP3 Transcription Factor Family AT3G53340 61.7 7.6e-50 193.7
Chy06g01902 . 6 113 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.4 1.3e-41 166.4
Chy07g01303 . 20 124 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.3 6.4e-41 164.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000266 8 6 6 8 9 3 3 3 3 2 3 3 6 4 4 6 3 10 6 3 4 4 4 3 4 3 2 16 9 4 152
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18210 PF00808 CBFD_NFYB_HMF 7.50E-27 CL0012 Chy TF