Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01902 ATGGCGGACTCCGACAACGACTCCGGCGGTGGTTACCAGAAATCCCCATCTCCACGTGAACACGACAGACTCCTCCCGATCGCTAACGTCGGCCGGATCATGAAGAAAGCTCTCCCTGGCAACGCCAAGATCTCAAAAGACGCCAAAGAAACCGTTCAAGAATGCGTCTCCGAGTTCATCAGCTTCGTCACCGGTGAAGCATCCGACAAGTGCCACAACGAGAAACGAAAAACGATCAACGGCGACGATTTGCTCTGGGCCATGGCTACCTTAGGGTTCGAAGACTATGTGGATCCTCTCAAGCTTTATCTCCAACGGTTTCGAGAAATTGAAGGGGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCTCCGCCGCGAACTCCGCCGGAGCTGGGAATAGTGGGTTTTTCGACGGCGGTGGGGAATTTGGGGGTGCGGGTGGGGGTGGGGGTGGGATGGGGATGGGAATGACGACGACGATGCCTCCAAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTAGTACTACCGGTGGGCCCAGAGAGAAATCCCCCGCCAATAGCATGGCCAACTTTGCTTTGTCTATTACTCTTCTCTTTTTGTTTTCGTCATTTATTGGCCTCGTTTTCGCTTACGATTCCCCTGCCGCCTCCCCAAAACCTCCTAAAACGCCTCATTCTCCTTCTCCGGCGCATTCTCCTGTTGTTTCGCCGCCGACTCACACTGTATCTCCGACTGCTTCTCCACCGGTCATAACTCCAGCAATTTCTCCGGCATTGGCTACCCCACCATCTGTAGCGCCCTCGAAGGCTCCGGCAGCGGTACCTATTTCTTCGCCGAGTGAAAATTCTCCGCTTTCGTCGCCGCCGTCTCCTCTCCCTTTCGATGCTTCTCCGGTTGGGGCTCCAGTGGAACCAGAAATCCCGGCAAATCCGATTTCTGGAGGGTCTCCGGTGGGGACGCCGTCGATATTTCCGTCGAGCAGTAGCCCACCGATGGCTACTCCGACAAGCTTAGCACCGGAAACGGCGGAGAGGCCTGGAAACGACGCATCGGCGTCAGGAAAGTACAAGATCGGGGTGGAGGTTATTTTGAGTGGGCTTTCTATTTGGGCTGCTTGGGCCTTTTGA 1146 55.67 MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASRDSASSAANSAGAGNSGFFDGGGEFGGAGGGGGGMGMGMTTTMPPNVYGSNGPRWDGPGFSTTGGPREKSPANSMANFALSITLLFLFSSFIGLVFAYDSPAASPKPPKTPHSPSPAHSPVVSPPTHTVSPTASPPVITPAISPALATPPSVAPSKAPAAVPISSPSENSPLSSPPSPLPFDASPVGAPVEPEIPANPISGGSPVGTPSIFPSSSSPPMATPTSLAPETAERPGNDASASGKYKIGVEVILSGLSIWAAWAF* 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22863372 22867128 - Chy6G124300.1 Chy06g01902 229611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01902 381 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634|GO:0006355|GO:0043565
Chy06g01902 381 MobiDBLite consensus disorder prediction 321 342 - -
Chy06g01902 381 MobiDBLite consensus disorder prediction 221 360 - -
Chy06g01902 381 MobiDBLite consensus disorder prediction 223 240 - -
Chy06g01902 381 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 158 IPR027113 GO:0001228|GO:0006355|GO:0016602
Chy06g01902 381 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 158 - -
Chy06g01902 381 MobiDBLite consensus disorder prediction 1 24 - -
Chy06g01902 381 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Chy06g01902 381 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Chy06g01902 381 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Chy06g01902 381 SUPERFAMILY Histone-fold 22 123 IPR009072 GO:0046982
Chy06g01902 381 MobiDBLite consensus disorder prediction 163 190 - -
Chy06g01902 381 Gene3D Histone, subunit A 11 134 IPR009072 GO:0046982
Chy06g01902 381 MobiDBLite consensus disorder prediction 288 304 - -
Chy06g01902 381 MobiDBLite consensus disorder prediction 241 255 - -
Chy06g01902 381 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01662 Chy-Chr1:22570705 Chy06g01902 Chy-Chr6:22863372 1.78E-46 dispersed
Chy06g01902 Chy-Chr6:22863372 Chy07g01303 Chy-Chr7:17697258 2.85E-55 dispersed
Chy06g01902 Chy-Chr6:22863372 Chy04g02095 Chy-Chr4:26324861 3.98E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18210 PF00808 CBFD_NFYB_HMF 7.50E-27 CL0012 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01902 K08065 - csv:101204640 298.13