Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01930 ATGCTTAGATCTTTACTGGATCTTTGGATCCAACACCATTTTGAAGGTTTCAGTGATTTTGAAATGGATTCATACGTTCGGGCTCAGGATCGAGTAGTAATGGGGAGAACTGATGATAACGTTGCTATTATTGGGGATTGGGTACCTCCAAGTCCTAGCCCAAGAACCTTTTTCTCAGCAATGCAAATGCTAGGGGAGGATATTGGTTCTAAACCTTCAATGGACACTACTACCAGCAGTGATCATAAAACCGAAGAACTCTTTCTCAGGCCTCGAGAACAAACGGTGTCCGAAAACGCCGTTGCAAGAGGCGGGATCCCGGGTGGCAATTCTGGGGACCAAGGAATGGAGTTCGGTACGTTCTCGGAGCAGAAATTTCGTGGGGGACTCGTGGAAAGGATTGCAGCTAGAGCTGGATTTAATGCTCCGAGATTGAATACAGAGAGCATTAGATCAACAGATCATTCTTTGAATTCAGAAGTAAAGTCTCCTTATTTGACAATACCACCTGGTCTCAGTCCCACTACATTGCTAGATTCTCCAGTTTTTCTTTCAAATTCACTGGTTCAACAATCTCCCACAACTGGGAAGTTTCCATTTTTACCAAATGTATGTATTTCTCGGAGCTCAACGATGATGTCAGAGGCCAACAACAAAGGCAACAACAATCTGTTCGACGATAACAATACATCATTTGCTTTCAGACCCAGTGTGGAATCTGGATCCTCCTTTTTTCTCAATGCAGCAAGCAAAACAGCTTCTGCTACTATTCTTCCACAATCTTGTCCAAGAATTGAGGTTCTAGTTCCACGTTCAGAAAATTCTTTTCAATCTCATCGTGTTGAACCATCTCTGTCTTTGCCCCAAAATCGAATTGGTCACCATCCTCAAGTGGGACTCTCTACAACGTACGTCGAGAAGGACAATGGGGGTAAGGCTGTGTCGGAAGAGCAAAGACCCTTTGATTCTCTTGGTGGTGGTAGTGGTGGTAGTGGTGAACATTCTTCACCTCTCGACGAGCAACTGGATGAAGGGGAGCAAAGAGGCAGTGGGGATTCTATGGCTGGTGGTGCTTGCGGTACTCCCTCGGAGGATGGGTATAATTGGAGAAAATACGGACAAAAACAGGTTAAAGGAAGCGAGTATCCTCGGAGTTATTACAAGTGCACACATCCTAACTGTCAGGTCAAGAAGAAAGTCGAGCGATCTCACGAGGGCCATATAACAGAGATCATCTATAAAGGAGCACATAACCACCCAAAGCCTTCACCAAACCGACGAGGAGCAATTGGATCTTCTGATTCCCATATGAATATGCAACTAGACATCCCTGCACAAGCAGGCCAACAAAGTGCTGATGTTCCTCTTTGGGAAGATTCACAAAAAGGGGTTCCAAGTGGAGCTCCTGATTGGATGCATGAGAACCTTGAGGTGACTTCTTCAGCATCTTTGGGTCCTGATTACGGCAATCAGCCTAACTCTTTACAAGCTCAAAATGGGAGTCATATTGAAACAGTTGAGGCCATTGATGCCTCATCCACTTTCTCTAATGATGAAGATGAAGATGATAGGGGAACACATGGCAGTATAACATTGGGATATGAAGGGGAAGGAGATGAATCTGAGTCTAAGAAAAGGAAACTCGATGCCTATGTAACAGAGATGAGTGGGGCCACTAGAGCTATCCGTGAGCCTAGGGTTGTTGTCCAGACTACCAGTGAAGTCGATATTCTGGATGATGGTTATCGTTGGCGCAAATACGGACAGAAGGTTGTGAAAGGAAATCCAAATCCTAGGAGTTACTACAAGTGCACAAATCCTGGCTGCACAGTGAGGAAGCATGTCGAGCGGGCGTCACATGACCTGAAGTCCGTGATAACCACATATGAAGGAAAACACAATCATGATGTTCCTGCAGCTCGAAACAGTAGCCACATCAGTTCGGGTACATCCAGTCCTGTAACTGGTCAAAACTCGAGTGCAGCAATTCAAACTCATGTTCACAGGCCAGGGCCATCCCAGCCTCAAAATACCATTCCAAGATTTGAAAGGCCAGCTTTTGGTTTTGCTGGAAGACAACAAATGGGGCCTGCCCATGGCTTTGCTTTTGGAATGAACCAACCTGGATTGGGAAATCTGACCATGGCAGCGGTTGGGCAACCCAAGCTTCCCGTTTTGCCAATGCATGCTTACTTAGGACAAGCACACCATGTTAATGAAATGGGTTTCTTGTTGCCTAAAGGAGAGCCCAATGTAGAACCTACATCTGATCTTGGCTTTTCCAGTGGTTCAACTGTGTATCAGCAAATTATGAGTAGGCTTCCACTTGGACCTGAGATGTGA 2343 45.5 MLRSLLDLWIQHHFEGFSDFEMDSYVRAQDRVVMGRTDDNVAIIGDWVPPSPSPRTFFSAMQMLGEDIGSKPSMDTTTSSDHKTEELFLRPREQTVSENAVARGGIPGGNSGDQGMEFGTFSEQKFRGGLVERIAARAGFNAPRLNTESIRSTDHSLNSEVKSPYLTIPPGLSPTTLLDSPVFLSNSLVQQSPTTGKFPFLPNVCISRSSTMMSEANNKGNNNLFDDNNTSFAFRPSVESGSSFFLNAASKTASATILPQSCPRIEVLVPRSENSFQSHRVEPSLSLPQNRIGHHPQVGLSTTYVEKDNGGKAVSEEQRPFDSLGGGSGGSGEHSSPLDEQLDEGEQRGSGDSMAGGACGTPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSHEGHITEIIYKGAHNHPKPSPNRRGAIGSSDSHMNMQLDIPAQAGQQSADVPLWEDSQKGVPSGAPDWMHENLEVTSSASLGPDYGNQPNSLQAQNGSHIETVEAIDASSTFSNDEDEDDRGTHGSITLGYEGEGDESESKKRKLDAYVTEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHISSGTSSPVTGQNSSAAIQTHVHRPGPSQPQNTIPRFERPAFGFAGRQQMGPAHGFAFGMNQPGLGNLTMAAVGQPKLPVLPMHAYLGQAHHVNEMGFLLPKGEPNVEPTSDLGFSSGSTVYQQIMSRLPLGPEM* 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23221339 23225551 + Chy6G124580.1 Chy06g01930 229639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01930 780 MobiDBLite consensus disorder prediction 279 370 - -
Chy06g01930 780 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 139 685 IPR044810 GO:0003700
Chy06g01930 780 SMART WRKY_cls 363 421 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy06g01930 780 SMART WRKY_cls 578 637 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy06g01930 780 Gene3D WRKY domain 565 631 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy06g01930 780 MobiDBLite consensus disorder prediction 513 546 - -
Chy06g01930 780 ProSiteProfiles WRKY domain profile. 364 422 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy06g01930 780 MobiDBLite consensus disorder prediction 631 681 - -
Chy06g01930 780 SUPERFAMILY WRKY DNA-binding domain 570 638 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy06g01930 780 ProSiteProfiles WRKY domain profile. 573 638 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy06g01930 780 MobiDBLite consensus disorder prediction 640 680 - -
Chy06g01930 780 Gene3D WRKY domain 358 423 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy06g01930 780 Pfam WRKY DNA -binding domain 364 420 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy06g01930 780 Pfam WRKY DNA -binding domain 579 635 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy06g01930 780 SUPERFAMILY WRKY DNA-binding domain 362 422 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy06g01930 780 PANTHER WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 139 685 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g02099 Chy-Chr4:26376564 Chy06g01930 Chy-Chr6:23221339 3.03E-15 dispersed
Chy06g01930 Chy-Chr6:23221339 Chy10g01039 Chy-Chr10:15648725 1.12E-82 dispersed
Chy06g01930 Chy-Chr6:23221339 Chy06g01876 Chy-Chr6:22629322 4.08E-97 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18212 PF03106 WRKY 3.20E-24 CL0274 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01930 K18835 - csv:101207853 1428.69