Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01938 ATGGCGATGCCTTCTCGTGAAGCAATTGATACTTTCATCAGCGTCACTGGTGCCTCTGAAGCCATTGCCGTTCAAAGCCTCGAGGCACATGGTTCTGATCTCAATGCTGCTGTGAATGCTTATTTCAATGAAGGAGATAGAAGTTCGTCTGTAAACGCACGTCAAGCCTCTGTTTCTGGTGAATATGATTTCATGGACATTGATGATCCAGTTGAAGTTGAACCCCAGGGTCCTCCTCGGTCTCTTCTATCTACAGCTAGAGAGATAATGAATCCCTTTTCATTACTTGATCAAAATCTGCGCCAGGGTTTCTTTGACCGCACTTCTGATTTTACAAGGTCTGCTCCACTTGTGACTCATCCAAGAGAGTTGAGGGAGATTCCCATAGAATTTAGAGATGGTAGTCGACCATCCAACCAATCAGGCCATGAGCCGACAATTGAGGATGTCACTGGAATTCCAGATGCCCATGGTCCAGAGGTTCATGGGACTGTCGTAGTTGATGATGGGGAAGATGAAGAACCTCCCGTTACTTCTATAGCACATGCACCAGATTTAGACCATCGGGCTGTTGCGAGTAACATATCTCGTGACAGAAATGCTGTATCTGGTGCCTTTGAAAGTGATGAGTTTCAGGACACAAATGATATTGAAGAAGAAATGATTCGTGCTGCAATTGAGGCTTCAAAAAAGGATGTTGGGCAAGCTTATCCGAGTGATCCCATAACTACGCACACTGATTTAAGCAACACTAGAACTCAAGAAAACCTTTCTCACTTAGATAATTTTGAATTTTCACCTGAAGCTTCATCTGTCAAGCCAGAGGAAGGTTTTCGTCGGCGAGGGGAGAATATTGGAGGATCTAAGGTAGAAGCTTCTAAGTCAACTGAGGTGGATGTGGAGCTGAGGAAAGTCAGAGGACTGAATGGAAGGATGGAAACAGGAAGCACGTCTGCTCAAGACGAAGTTGAAGACCTAGAGGAAGATAATTTAGTTAGGCATCGATCTAAACGCAAGTCCACTGGTTATGTAGAGCCTTCAAAGGGGGATGAAGTAGATGTAAACCTTGCATCTAGTCCCAAGCATTCTGATACTAGTAATAATCCACAGCGCAATGGGAATATCTTTCCTTCTGATGAGTGGGGTGGAATTTCTTCGGAGGAGCATGATGAAGCAGTCATGCTGGAGGCTGCCATGTTTGGTGGAGCTTCTGAAGGAAGTTCGTTCCATTTTCCATCTGCACCACATGAATTCATGAGAAATCAAGGTTCATATATCCAGCCAGCCCCTCGCCCTCCTTCTCCTTCTTTAGTAGCTCAGCGTTTGATAAGGGAACAGCAGGATGATGAGTATCTTGCAGCCTTGCAAGCTGACAGAGAAAAAGAATTGAAAGCCTTGGAAGAAGCTGCAGCTGTTCGTGAACAAGAAAGACAGAGAGAGGAAGAATCCCGACAGAAATTGGATGCTGAGAAGGAACTTGAAAGACGCTTGGCAGAAATAGAAGCTTCTCTTCCTACTGAACCAAGAACAGATGACGAGAATGCTGTGACACTATTAGTGCGCATGCCAGATGGCAGTCGCCGCGGTCGTCGATTTCTCAAAACTGATAAGCTACAGTGTCTCTTGGACTTCATTGATATTGGTAGAGTTGTCAAGCCTGGCTCCTACAGATTGGTGAGGCCATATCCTCGTAAAGCTTTTGGAGATGGAGAGGGTTCATTAACATTAAATGAACTTGGACTAAACAGCAAACAAGAAGCATTGTATCTGGAGTTGATTTAG 1782 44.78 MAMPSREAIDTFISVTGASEAIAVQSLEAHGSDLNAAVNAYFNEGDRSSSVNARQASVSGEYDFMDIDDPVEVEPQGPPRSLLSTAREIMNPFSLLDQNLRQGFFDRTSDFTRSAPLVTHPRELREIPIEFRDGSRPSNQSGHEPTIEDVTGIPDAHGPEVHGTVVVDDGEDEEPPVTSIAHAPDLDHRAVASNISRDRNAVSGAFESDEFQDTNDIEEEMIRAAIEASKKDVGQAYPSDPITTHTDLSNTRTQENLSHLDNFEFSPEASSVKPEEGFRRRGENIGGSKVEASKSTEVDVELRKVRGLNGRMETGSTSAQDEVEDLEEDNLVRHRSKRKSTGYVEPSKGDEVDVNLASSPKHSDTSNNPQRNGNIFPSDEWGGISSEEHDEAVMLEAAMFGGASEGSSFHFPSAPHEFMRNQGSYIQPAPRPPSPSLVAQRLIREQQDDEYLAALQADREKELKALEEAAAVREQERQREEESRQKLDAEKELERRLAEIEASLPTEPRTDDENAVTLLVRMPDGSRRGRRFLKTDKLQCLLDFIDIGRVVKPGSYRLVRPYPRKAFGDGEGSLTLNELGLNSKQEALYLELI* 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23293966 23299165 + Chy6G124660.1 Chy06g01938 229647

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01938 593 MobiDBLite consensus disorder prediction 309 384 - -
Chy06g01938 593 SMART ubx_3 508 592 IPR001012 GO:0005515
Chy06g01938 593 Pfam UBA-like domain 6 47 - -
Chy06g01938 593 PANTHER FAS-ASSOCIATED PROTEIN 1 593 - -
Chy06g01938 593 MobiDBLite consensus disorder prediction 327 346 - -
Chy06g01938 593 MobiDBLite consensus disorder prediction 231 297 - -
Chy06g01938 593 Gene3D - 5 45 - -
Chy06g01938 593 MobiDBLite consensus disorder prediction 130 180 - -
Chy06g01938 593 CDD UBX 517 591 - -
Chy06g01938 593 Pfam UBX domain 512 591 IPR001012 GO:0005515
Chy06g01938 593 MobiDBLite consensus disorder prediction 239 265 - -
Chy06g01938 593 PANTHER OS09G0525600 PROTEIN 1 593 - -
Chy06g01938 593 Coils Coil 452 499 - -
Chy06g01938 593 MobiDBLite consensus disorder prediction 358 375 - -
Chy06g01938 593 MobiDBLite consensus disorder prediction 273 287 - -
Chy06g01938 593 CDD UBA_Ubx1_like 6 42 - -
Chy06g01938 593 ProSiteProfiles UBX domain profile. 511 589 IPR001012 GO:0005515
Chy06g01938 593 SUPERFAMILY UBA-like 5 44 IPR009060 GO:0005515
Chy06g01938 593 Gene3D - 512 592 - -
Chy06g01938 593 SUPERFAMILY Ubiquitin-like 474 583 IPR029071 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01938 - - - csv:101208817 1112.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00375 Chy-Chr3:5190602 Chy06g01938 Chy-Chr6:23293966 9.50E-08 dispersed
Chy06g00200 Chy-Chr6:1310202 Chy06g01938 Chy-Chr6:23293966 8.22E-13 dispersed
Chy06g01938 Chy-Chr6:23293966 Chy12g01253 Chy-Chr12:17145849 1.89E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g369 . . . . . . . . Cmo06g00724 Cmo16g01046 . . . . . . . . . . . . . . Cla10g00353 . . . . . . . . . . . . . . . . . . . . . . . . . . Cma16g01003 Car06g00629 . Cpe08g00807 . . . . . . . . . . . . . . . . . Chy06g01938 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004108 2 1 2 2 2 1 2 1 1 1 3 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 2 2 44