Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01942 AGACATGATCACTACAAAGGAATCCGCTGCCGGGGTGGCAAATGGGTCTCCGAGATTCGTGAGCCACGTAAGACTAACCGAATATGGCTCGGCACCTACCCTACACCCGAAATGGCTGCTGCTGCCTACGACGTAGCCGCACTCGCACTCAAGGGTTGCAATGCCGTTCTCAACTTTCCCAACTCAGTTGCCTTCTACCCGGTTCCTGCTTCCACATCTCCCACTGATATCCGTATTGCTGCTGCTGCTGCCGCCGCGTCCAAAAAGGTCGATGATCAAGGAGAAAACAGTTACCATAACTCTCACTACCAATCTCCACCAACCAATGAGTTTGTCGATGAAGAAGCGCTGTTCGGAATGCCAAATCTTTTACATGACATGGCTGAGGGAATGCTGTTGTCGCCGCCACGAATGAACTCGTCGCCGTCTCGACATGATTACTACTCATGGAATTCAAGTGGAGATGGAAATCTTTGGAGCTACCACTAG 489 51.12 RHDHYKGIRCRGGKWVSEIREPRKTNRIWLGTYPTPEMAAAAYDVAALALKGCNAVLNFPNSVAFYPVPASTSPTDIRIAAAAAAASKKVDDQGENSYHNSHYQSPPTNEFVDEEALFGMPNLLHDMAEGMLLSPPRMNSSPSRHDYYSWNSSGDGNLWSYH* 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23340423 23340911 + Chy6G124700.1 Chy06g01942 229651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01942 162 ProSiteProfiles AP2/ERF domain profile. 4 60 IPR001471 GO:0003700|GO:0006355
Chy06g01942 162 SUPERFAMILY DNA-binding domain 4 62 IPR016177 GO:0003677
Chy06g01942 162 SMART rav1_2 4 66 IPR001471 GO:0003700|GO:0006355
Chy06g01942 162 Pfam AP2 domain 4 52 IPR001471 GO:0003700|GO:0006355
Chy06g01942 162 Gene3D AP2/ERF domain 3 62 IPR036955 GO:0003700|GO:0006355
Chy06g01942 162 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 1 161 - -
Chy06g01942 162 CDD AP2 4 62 IPR001471 GO:0003700|GO:0006355
Chy06g01942 162 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF026 1 161 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01942 Chy-Chr6:23340423 Chy09g01185 Chy-Chr9:14050810 1.48E-58 dispersed
Chy06g01942 Chy-Chr6:23340423 Chy08g00915 Chy-Chr8:16587585 3.49E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18216 PF00847 AP2 1.60E-10 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01942 - - csv:101202953 333.954