Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01970 ATGGCATCTTCAAGGTCCCCGAATGGATCTTCCGATGATATTCTCGATACCTCCCCTTTGATGGGGACTCCGAATCGGTCGTTGGACGATACGCATTCGGGTCGGAGATTTGTGCAGAGGCAAAGTTTGCGTCAGGCGGCGAGGTTTCTTAGGCAAGCTAGTAATCGGAGGACGATGCGTGAGCCGTCTATGTTGGTAAGAGAGACGGCTGCGGAGCAATTGGAGGAGAGGCAGAGTGATTGGGCGTATTCGAAGCCGGTTGTCATCCTTGATATCGTTTGGAATTTCGCTTTTGTTGTTGTTGCTGCTACCATTTTGGTTCTCAGCCGTAACGAGTCTCCTTCAATGCCTTTGAGACTGTGGATCGTGGGGTATGCGTTTCAATGTATTCTTCATATGGTGTGCGTTTGTGTTGAGTATCGTCGTCGCCGACAGCTACGATATTCGGCCTTTAGTTCGATGGAGGAGGGAAATTCTGCACGCGCGATTTCGGGATTGGGGTCGAGGGCAAACTCGAGTCATTATGTATCATTGGCTCAATTGGATGAGAACGATAGCAGTGTAGCAAAGCACCTTGAATCTGCAAATACAATGTTCTCCTTCATCTGGTGGATTATTGGATTCTATTGGGTATCTGCAGGAGGACAATCTTTAGCACAGGCCTCTCCCCTGCTTTACTGGTTATGTATCATATTCTTGGGTTTTGATGTGTTCTTTGTGGTTTTCTGTGTTGCTTTGGCATGTATCATTGGAATTGCTGTTTGCTGCTGTCTTCCTTGTATCATTGCACTTTTATATGCTGTAGCGGACCAGGAAGGAGCGACCAAAGAAGATGTCGAACAGTTGTCAAAATTTAAATTCAGAAAGGTTGAAAACACCGAGAAATTCTCCACTGATGTACAGGAACCTCTCGGTGGGATAATGTCCGAGTGTTGTACAGATTCACCCATTGAACGCCCCCTCTTGCACGAGGATGCGGAGTGTTGCATCTGCCTTTCTGCATACGAGGATGGTGTCGAGCTACGAGAGCTCCCATGTGGTCATCACTTCCACTGTGCATGCGTTGATAAATGGCTGTATATTAATGCCACCTGTCCTCTCTGCAAGTACAACATCTTGAAAAATAGCAATCTTGCTCAAGAGGAAGTTTGA 1152 46.88 MASSRSPNGSSDDILDTSPLMGTPNRSLDDTHSGRRFVQRQSLRQAARFLRQASNRRTMREPSMLVRETAAEQLEERQSDWAYSKPVVILDIVWNFAFVVVAATILVLSRNESPSMPLRLWIVGYAFQCILHMVCVCVEYRRRRQLRYSAFSSMEEGNSARAISGLGSRANSSHYVSLAQLDENDSSVAKHLESANTMFSFIWWIIGFYWVSAGGQSLAQASPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGATKEDVEQLSKFKFRKVENTEKFSTDVQEPLGGIMSECCTDSPIERPLLHEDAECCICLSAYEDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKNSNLAQEEV* 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23724069 23729053 - Chy6G124980.1 Chy06g01970 229679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01970 383 CDD RING-H2_RNF111_like 327 371 - -
Chy06g01970 383 PANTHER TARGET OF ERK KINASE MPK-1 6 383 - -
Chy06g01970 383 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 383 - -
Chy06g01970 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 316 375 IPR013083 -
Chy06g01970 383 ProSiteProfiles Zinc finger RING-type profile. 328 369 IPR001841 -
Chy06g01970 383 SMART ring_2 328 368 IPR001841 -
Chy06g01970 383 SUPERFAMILY RING/U-box 319 375 - -
Chy06g01970 383 MobiDBLite consensus disorder prediction 1 28 - -
Chy06g01970 383 Pfam Ring finger domain 327 369 IPR001841 -
Chy06g01970 383 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00197 Chy-Chr6:1291363 Chy06g01970 Chy-Chr6:23724069 1.95E-156 dispersed
Chy06g01970 Chy-Chr6:23724069 Chy09g00829 Chy-Chr9:10983666 3.53E-117 dispersed
Chy06g01970 Chy-Chr6:23724069 Chy02g01257 Chy-Chr2:9188097 6.35E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01970 - - csv:101209228 758.444