Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy06g01971 | ATGGCGTCTTCTTCAGGCAGCAGTAGCAACTACGACATTCCGTGGGTGGAGAAGTACAGGCCCAACAAGGTCACTGACATTGTGGGCAATGAAGATGCAGTTTCTCGTCTCCAAGTCATTGCTCGGGACGGCAACATGCCCAATCTCATATTATCTGGTCCGCCAGGAACTGGGAAGACAACCAGTATTTTGGCTCTTGCTCATGAGCTCTTGGGACTGAATTACAAGGAGGGTGTTCTGGAGCTTAATGCATCAGATGATAGGGGAATAGATGTTGTGAGGAACAAAATCAAGATGTTTGCTCAAAAGAAAGTAACATTGCCTCCTGGTCGACACAAAGTGGTAATATTGGATGAAGCTGACAGCATGACAACTGGAGCACAACAAGCTTTGAGGCGTACAATGGAAATTTATTCAAACACAACACGTTTTGCCCTTGCATGTAATACCTCCTCAAAAATTATTGAGCCTATTCAGAGTAGATGTGCAATTGTTCGATTTTCAAGATTAACAGATCAAGAGATTCTTGGGCGCCTTATGGTGGTGATTCAGGCTGAAAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACTGCTGATGGTGATATGAGGCAGGCGCTGAATAATTTGCAAGCTACACATAGTGGATTCCGCTTTGTAAACCAGGACAATGTTTTCAAGGTTTGCGATCAACCGCATCCGCTGCATGTGAAGAATGTGGTACGCAATGTGCTTGAAGGTAAATTTGATGATGCTTGTACAGGCTTGAGGCAACTCTACGACTTAGGCTATTCTCCCACTGACATAATAACCACTCTTTTCCGTATCATTAAGAACTACGATATGGCCGAATATCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCTCATATGAGAATCTGTGATGGAGTCGGTTCTTACCTTCAACTATGTGGTCTTTTGGCCAAGCTTTCCATGGTTCGTGAGACTGCAAAAGCACCATGA | 996 | 43.88 | MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGLNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHVKNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSMVRETAKAP* | 332 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 23730863 | 23738165 | + | Chy6G124990.1 | Chy06g01971 | 229680 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy06g01971 | 331 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 11 | 233 | IPR027417 | - | |
| Chy06g01971 | 331 | CDD | HLD_clamp_RFC | 170 | 232 | - | - | |
| Chy06g01971 | 331 | Gene3D | - | 235 | 327 | - | - | |
| Chy06g01971 | 331 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 234 | 325 | IPR008921 | GO:0003677|GO:0006260 | |
| Chy06g01971 | 331 | SMART | AAA_5 | 45 | 177 | IPR003593 | - | |
| Chy06g01971 | 331 | CDD | AAA | 28 | 165 | - | - | |
| Chy06g01971 | 331 | Pfam | Replication factor C C-terminal domain | 235 | 320 | IPR013748 | - | |
| Chy06g01971 | 331 | Gene3D | - | 171 | 234 | - | - | |
| Chy06g01971 | 331 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 6 | 329 | - | - | |
| Chy06g01971 | 331 | Gene3D | - | 7 | 170 | IPR027417 | - | |
| Chy06g01971 | 331 | PANTHER | REPLICATION FACTOR C SUBUNIT 2 | 6 | 329 | - | - | |
| Chy06g01971 | 331 | Pfam | ATPase family associated with various cellular activities (AAA) | 49 | 167 | IPR003959 | GO:0005524|GO:0016887 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy03g00774 | Chy-Chr3:10484610 | Chy06g01971 | Chy-Chr6:23730863 | 2.66E-29 | dispersed | |
| Chy06g00383 | Chy-Chr6:2579940 | Chy06g01971 | Chy-Chr6:23730863 | 7.15E-06 | dispersed | |
| Chy06g01971 | Chy-Chr6:23730863 | Chy07g00561 | Chy-Chr7:4772837 | 2.53E-63 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy06g01971 | K10755 | - | csv:101208984 | 655.595 |