Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01975 ATGGCTGGTCGTATATTTGAAACTTTGTCCTTTGGTGGGTCTCAACATGGTCAAGGTAATCAATCTTTGCCATTTTCATCTGGAAATACTTCATTGAAGATCTTACTGTTACATGGTTATTTAGACATATGGGTTAAGGAAGCTAAGAACCTTCCCAATTTGGATATGTTTCACAAGACTCTTGGGGATATGTTTTCAAAAGTGTCTTTTAAGGGTTCAAAAAACAGTAATGGGGAAAAGCCTCAAAAAGTTACCAGTGATCCTTATGTGACTATTTCTGTATCAAATGCTGTAATTGGAAGAACTTTTGTGATTGATAATAGTGAAAATCCTGTTTGGATGCAACATTTTAATGTCCCTGTTGCTCATTATGGTGCTGAAGTGCATTTTGTTGTTAAAGACCATGATGTTGTAGGTTCACAAATCATGGGTGTTGTTGCAATTCCTGTTGAACAATTGTATTCAGGAGCCATAGTTGAAGGAACCTACCCAATTTTGAATAGTAGTAGGAAGCCCTGTAAGCCTGGGGCAGTCTTGAGTTTGTCGATTCAGTATACTCCAGCTGACCGTGCGGCCATTTTTCGAGGTGGAATGTATGCGTCTCCTGACCATCAGGGAGTTTTATGCACATATTTTCCTCTTAGGAAAGGGGGTAAAGTTACATTGTACCAAGATGCTCATGTTGAAGATGGTTGTCTTCCAACAGACTATAGGCTTCATGGTGGAGTTCAATATGAACATAGGAGCTGCTGGGACGATATTTCTGAATCGATTAGTGAGGCTCGCCGTTTGATCTATATTACGGGCTGGTCTGTTTACCATAGTGTTAAATTGGTTAGAGATGGGACAAGAAAAGAATGCATACTAGGGGACCTTCTTAAAGCCAAGTCCCAAGAAGGAGTAAGAGTATTGCTTCTTATATGGGATGATCCAACTTCAACTAGTATGTTGGGATATAAAACGGTTGGGATGATGAATACAAATGATGAGGAGACTCGTCGTTTCTTTAAGAACTCGTCAGTCCAAGTGGTTTTGTGCCCACGGTCCGGGGGAAAAGGTCATAGTTGGCTTAAAAAACAGGAAGCTGGAACCATCTATACTCACCATCAGAAGACAGTTATTGTAGATGCTGATGCTGGAAATTACAGAAGAAAAATTGTAGCTTTTGTTGGAGGTCTTGATTTATGTTTGGGCCGATATGATACCTCAAGACATCCTCTTTTCCGGACATTGCAAACTACACATGTGGATGACTTCCATAACCCTAACTTTACGGGTCCAACTACTGGCTGTCCAAGAGAACCATGGCATGATTTGCACTCTAAGATTGACGGTCCAGCGGCATATGACGTACTTGCAAATTTTGAGGAGCGTTGGATGAGAGCTTCAGAGCCTCATGGCCTTAAAAAGCTAAAGAAGTTACATGAAGATGTATTACTCAAAATTGAAAGAATTCCTGAAATTTTGGGAATTGCTGATGTTTCTCAAATATGTAATAATGATCCAGAAGGTTGGAACGTCCAGATTTTTCGCTCAATCGATTCCAACTCCGTAAAAGGGTTTCCTGACAAGCCAAAAGATGCCATAAGTAGGAACTTAGTATGTGGAAAGAATGTGATGATAGACTCGAGTATACATTCAGCGTATGTTAGTGCAATTCGAGCTGCTCAACGCTTCATTTACATTGAAAACCAATACTTCCTTGGGTCATCTTATAATTGGAGTGCTCACAAAGACTTGGGGGCTAATAACTTAATACCAATGGAAATAGCCCTTAAGATTGTGGAGAAAATCAAAGCTAAAGAAAGATTTTCAGCTTATGTGGTTATTCCAATGTGGCCAGAAGGTGTTCCTACAAGCACTCCTATTCAAAGAATTCTTTTCTGGCAGAGTAGGACAATGCAAATGATGTATGAAATGATATATCAAGCGTTAGAGGAGGTTGGACTTCACAAAACATATGAACCTCAAGACTACTTAAATTTCTTTTGTCTTGGAAACCGTGAGATGCTCGATGTGAGAGACGGTGTTGAAGCCGGGAATGGAGAAAAGAATGCTCAATCACTTGTTCGTAAGAGTCGACGCTTTATGATCTATGTTCATTCTAAAGGAATGATAGTAGATGATGAGTACGTCTTACTAGGATCAGCAAATATCAATCAACGCTCCCTTGAAGGTACCAGAGACACTGAAATAGCAATGGGCGCATATCAATCTCGTCATACATGGTCATCAACCAAACGCTCATGCCCACGTGGTCAGGTGTTTGGCTATAGAATGTCATTATGGGCAGAGCACACAGGAACAATGGAGGAATGTTTTGAAAGACCAGAGAGTATTGAATGTGTAAGAAGAATGAGGTCATTGGGTGAGAGAAATTGGAAACAATATGCAGCTGAGGAAGTGAGTGAAATGAGAAGTCATCTTCTTAAATATCCATTAAAAGTTGATCCAACTGGTAAGGTCACTCATCTTCCTGGCTCTGAATCCTTCCCTGACCTTGGTGGCAACATATTGGGAACATTCACAGTCATACAAGAAAATCTTACAATTTGA 2556 40.14 MAGRIFETLSFGGSQHGQGNQSLPFSSGNTSLKILLLHGYLDIWVKEAKNLPNLDMFHKTLGDMFSKVSFKGSKNSNGEKPQKVTSDPYVTISVSNAVIGRTFVIDNSENPVWMQHFNVPVAHYGAEVHFVVKDHDVVGSQIMGVVAIPVEQLYSGAIVEGTYPILNSSRKPCKPGAVLSLSIQYTPADRAAIFRGGMYASPDHQGVLCTYFPLRKGGKVTLYQDAHVEDGCLPTDYRLHGGVQYEHRSCWDDISESISEARRLIYITGWSVYHSVKLVRDGTRKECILGDLLKAKSQEGVRVLLLIWDDPTSTSMLGYKTVGMMNTNDEETRRFFKNSSVQVVLCPRSGGKGHSWLKKQEAGTIYTHHQKTVIVDADAGNYRRKIVAFVGGLDLCLGRYDTSRHPLFRTLQTTHVDDFHNPNFTGPTTGCPREPWHDLHSKIDGPAAYDVLANFEERWMRASEPHGLKKLKKLHEDVLLKIERIPEILGIADVSQICNNDPEGWNVQIFRSIDSNSVKGFPDKPKDAISRNLVCGKNVMIDSSIHSAYVSAIRAAQRFIYIENQYFLGSSYNWSAHKDLGANNLIPMEIALKIVEKIKAKERFSAYVVIPMWPEGVPTSTPIQRILFWQSRTMQMMYEMIYQALEEVGLHKTYEPQDYLNFFCLGNREMLDVRDGVEAGNGEKNAQSLVRKSRRFMIYVHSKGMIVDDEYVLLGSANINQRSLEGTRDTEIAMGAYQSRHTWSSTKRSCPRGQVFGYRMSLWAEHTGTMEECFERPESIECVRRMRSLGERNWKQYAAEEVSEMRSHLLKYPLKVDPTGKVTHLPGSESFPDLGGNILGTFTVIQENLTI* 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23784904 23790489 - Chy6G125030.1 Chy06g01975 229684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01975 851 PIRSF PLD_plant 26 851 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Chy06g01975 851 Pfam Phospholipase D C terminal 771 841 IPR024632 -
Chy06g01975 851 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 37 187 IPR035892 -
Chy06g01975 851 Gene3D Endonuclease Chain A 507 745 - -
Chy06g01975 851 PANTHER PHOSPHOLIPASE D BETA 1-LIKE 6 851 - -
Chy06g01975 851 PANTHER PHOSPHOLIPASE D 6 851 IPR015679 -
Chy06g01975 851 SMART C2_3c 40 162 IPR000008 -
Chy06g01975 851 ProSiteProfiles C2 domain profile. 15 163 IPR000008 -
Chy06g01975 851 Gene3D C2 domain 34 171 IPR035892 -
Chy06g01975 851 Gene3D Endonuclease Chain A 238 479 - -
Chy06g01975 851 SUPERFAMILY Phospholipase D/nuclease 545 783 - -
Chy06g01975 851 SUPERFAMILY Phospholipase D/nuclease 210 463 - -
Chy06g01975 851 SMART pld_4 364 399 IPR001736 GO:0003824
Chy06g01975 851 SMART pld_4 696 723 IPR001736 GO:0003824
Chy06g01975 851 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 364 399 IPR001736 GO:0003824
Chy06g01975 851 CDD C2_plant_PLD 35 186 - -
Chy06g01975 851 Pfam Phospholipase D Active site motif 697 723 IPR001736 GO:0003824
Chy06g01975 851 Pfam Phospholipase D Active site motif 365 399 IPR001736 GO:0003824
Chy06g01975 851 Pfam C2 domain 39 165 IPR000008 -
Chy06g01975 851 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 696 723 IPR001736 GO:0003824
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02000 Chy-Chr1:24975703 Chy06g01975 Chy-Chr6:23784904 0 dispersed
Chy06g01975 Chy-Chr6:23784904 Chy11g02001 Chy-Chr11:25893372 0 dispersed
Chy06g01975 Chy-Chr6:23784904 Chy03g01122 Chy-Chr3:14515013 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01975 K01115 - csv:101208016 1736.85