Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01979 ATGGCTTCCCATTTCCCTCGTTGGAGTCTTGTCCTCACCATCTTTTTCTTGTCCTTTACAATGCCGGAGATGACAACTAAATCTGTACTCGCCATCTTCCGACCAAGTCCTTGGAAGCTCGCCCATGCCACCTTCTATGGGGATGAGACTGCATCTGAGACAATGGGAGGAGCGTGTGGTTATGGAAACTTGTTCACAAATGGGTATGGCGTTGATACGGCGGCTCTAAGCTCTACACTCTTCAACAATGGCTACGCTTGTGGAACTTGCTTTCAAATCAAATGTGCTCAATCCAAAGCTTGTTACTCTAATGTTGCTTTCACGACGGTGACTGCGACCAACCTTTGCCCCCCAAATTGGGCTAAACCTTCGGACAACGGCGGATGGTGCAACCCTCCAAGGGTTCACTTCGACATGTCGAAGCCAGCCTTTATGAAGATCGCCAATTGGAAGGCTGGGATCATCCCCGTCGTGTACCGACGTGTCCCGTGCGGTAAAAAAGGTGGCCTTCGGTTCACATTACAGGGAAATGGCTACTGGCTTTTGGCGTACGTGATGAACGTCGGTGGCAGCGGCGACGTGTCGGGAATGTGGGTGAAAGGGAGCAAAACAGGGTGGATCAAAATGAGCCATAACTGGGGAGCTTCATATCAAGCTTTTTCAACTTTGGTTGGCCAATCTCTGTCTTTTAGAATCACTTCTTACACAACCAAAGAGACCATCACAGCTTGGAACGTTGCTCCTTCTAGTTGGAGGTTTGGTTCGACCTACAACGCCAACGTCAACTTTCGTTGA 795 49.43 MASHFPRWSLVLTIFFLSFTMPEMTTKSVLAIFRPSPWKLAHATFYGDETASETMGGACGYGNLFTNGYGVDTAALSSTLFNNGYACGTCFQIKCAQSKACYSNVAFTTVTATNLCPPNWAKPSDNGGWCNPPRVHFDMSKPAFMKIANWKAGIIPVVYRRVPCGKKGGLRFTLQGNGYWLLAYVMNVGGSGDVSGMWVKGSKTGWIKMSHNWGASYQAFSTLVGQSLSFRITSYTTKETITAWNVAPSSWRFGSTYNANVNFR* 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23805963 23806888 + Chy6G125070.1 Chy06g01979 229688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01979 264 PRINTS Expansin/Lol pI family signature 245 259 IPR007118 GO:0005576
Chy06g01979 264 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Chy06g01979 264 PRINTS Expansin/Lol pI family signature 55 73 IPR007118 GO:0005576
Chy06g01979 264 PRINTS Expansin/Lol pI family signature 77 95 IPR007118 GO:0005576
Chy06g01979 264 PRINTS Expansin/Lol pI family signature 37 52 IPR007118 GO:0005576
Chy06g01979 264 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576
Chy06g01979 264 Gene3D - 22 164 IPR036908 -
Chy06g01979 264 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 259 IPR007117 -
Chy06g01979 264 PANTHER EXPANSIN-A15 6 264 IPR002963 GO:0009664
Chy06g01979 264 Gene3D - 165 264 IPR036749 -
Chy06g01979 264 PRINTS Expansin signature 245 261 IPR002963 GO:0009664
Chy06g01979 264 PRINTS Expansin signature 168 180 IPR002963 GO:0009664
Chy06g01979 264 PRINTS Expansin signature 180 201 IPR002963 GO:0009664
Chy06g01979 264 PRINTS Expansin signature 108 118 IPR002963 GO:0009664
Chy06g01979 264 PRINTS Expansin signature 144 157 IPR002963 GO:0009664
Chy06g01979 264 PRINTS Expansin signature 127 144 IPR002963 GO:0009664
Chy06g01979 264 PRINTS Expansin signature 68 82 IPR002963 GO:0009664
Chy06g01979 264 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 56 169 IPR007112 -
Chy06g01979 264 Pfam Lytic transglycolase 73 159 IPR009009 -
Chy06g01979 264 PANTHER EXPANSIN-A7 6 264 - -
Chy06g01979 264 SUPERFAMILY PHL pollen allergen 166 258 IPR036749 -
Chy06g01979 264 SUPERFAMILY Barwin-like endoglucanases 29 187 IPR036908 -
Chy06g01979 264 SMART dpbb_1 73 159 IPR007112 -
Chy06g01979 264 Pfam Expansin C-terminal domain 171 248 IPR007117 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy06g01979 Chy09g01169 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01979 Chy-Chr6:23805963 Chy12g00201 Chy-Chr12:2415956 3.88E-98 dispersed
Chy06g01979 Chy-Chr6:23805963 Chy09g01169 Chy-Chr9:13884835 3.75E-153 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01979 - - csv:101207770 553.903