Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g02009 ATGATATCGTTCATTAGATTTCGGAATTTATCCTACAAATTCCGAAACGAAACTTTTTTTATTAGATGTTTTCATTCTGGAACGAATCCGAAATCCAATTCTCCAGATTCTTCCTCCTCTACCGTTGCTATTTTCTGGGATTTGGATAATAAACCACCGAAATCGTTACCGCCTTACCAAGCTGCTGTTAAGCTTAGGACTGCAGCAGCTTCCTTCGGCGCGGTTCGGTATATGGTGGCGTATGCGAATCGGCATGCGTTTAGCTACGTGCCGCAAGTTGTTAGAGAGCGGAAACGAGAGAGGAAGATGCTTAATCAATTGGAGAGAAAAGGTGTGATTAAATCGATTGAACCATATCTGTGTCGTGTTTGTGGGAGGAATTTTTATACGAATGAGAAGTTAGTGAATCATTTTAAGCAAATTCATGAGAGTGAGCATAAGAAGAGATTGAATCAGATTGAATCTGCGAAGGGTAGTAGAAGAGTGAAGTTGGTTGCTAAGTATTCGATGAAAATACAGAAGTATAAGAATGCTGCTAGGGATGTTTTGACTCCTGAAGTGGGATATGGTTTAGCTGATGAGTTGAAGAGGGCAGGGTTTTTTGTGAAGACTGTGTCGGATAAGCCTGAAGCTGCTGATGTAGAATTGAGAAATGACATGGTTGAGATTATGGATAGGAGAAAAGCAGAGTGTTTGGTTCTTGTATCAGATGATTCTGATTTTGTGAATGTTTTGAAGGAAGCTAAGTTAAGATGTCTCAGGACAGTTGTTGTAGGGGATTTGAATGATGGGCCATTGAAGAGAAATGCTGATTCTGGGTTTTCTTGGAAGGAAATTTTAATGGGGAAGGCTAAAAAAGAGGCTGTTTCTGTTGTGGGAAAATGGAAGGATCGGGATGTTTTGAAGAGATTGGAATGGACATACAATCCTCCGTTGGAGAAGAAAGTGTCTGGTTTAGATGATGATATAGGCGAGGATGACGATGTTGAAGGAGGTTCTGTTGATGGGGGACTTTGTGAGAATATGCAAAATAATGACAGGGGTGCTTGGTGGGATCTCAGCTCTGATGCTGAAACTGATACTGTTTCATCACCATCATGGAAATGA 1107 40.83 MISFIRFRNLSYKFRNETFFIRCFHSGTNPKSNSPDSSSSTVAIFWDLDNKPPKSLPPYQAAVKLRTAAASFGAVRYMVAYANRHAFSYVPQVVRERKRERKMLNQLERKGVIKSIEPYLCRVCGRNFYTNEKLVNHFKQIHESEHKKRLNQIESAKGSRRVKLVAKYSMKIQKYKNAARDVLTPEVGYGLADELKRAGFFVKTVSDKPEAADVELRNDMVEIMDRRKAECLVLVSDDSDFVNVLKEAKLRCLRTVVVGDLNDGPLKRNADSGFSWKEILMGKAKKEAVSVVGKWKDRDVLKRLEWTYNPPLEKKVSGLDDDIGEDDDVEGGSVDGGLCENMQNNDRGAWWDLSSDAETDTVSSPSWK* 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24043618 24044724 + Chy6G125370.1 Chy06g02009 229718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g02009 368 ProSitePatterns Zinc finger C2H2 type domain signature. 121 142 IPR013087 -
Chy06g02009 368 Gene3D - 34 278 - -
Chy06g02009 368 MobiDBLite consensus disorder prediction 317 343 - -
Chy06g02009 368 SUPERFAMILY beta-beta-alpha zinc fingers 118 144 IPR036236 -
Chy06g02009 368 PANTHER - 18 361 - -
Chy06g02009 368 Coils Coil 90 110 - -
Chy06g02009 368 CDD PIN_LabA-like 129 260 - -
Chy06g02009 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 119 147 IPR013087 -
Chy06g02009 368 Pfam NYN domain 191 271 IPR021139 GO:0004540
Chy06g02009 368 MobiDBLite consensus disorder prediction 349 368 - -
Chy06g02009 368 PANTHER ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN 18 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g02009 Chy-Chr6:24043618 Chy07g00154 Chy-Chr7:1309088 5.75E-73 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18218 PF01936 NYN 6.80E-10 CL0280 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g02009 - - csv:101211196 697.582