Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g02018 ATGTCATCTTCTTCCCTTCCTACTACTTTCTCTCAACTTCCTCCTCCTCCTTCCGACCAGCTTTGCTACGTTCATTGTAACATTTGCGACACGGTTTTAGCGGTGAGTGTTCCTTCTACTAGTTTGTTCAAAAGGGTTACTGTTCGTTGTGGCTATTGTGCCAATCTTCTGCCAGTGAATATGTGTGGTGGAATGCTTCTCCCTTCTCCAAGTCAATTTCATGGCTTCACTCACTCAACCACTTTTTTCTCTCCCAATACCCACAATTTCTTGGAAGAGATCTCAAATCCAAATCCAAATTTTTTGATGAACCAAACAGAAGGAATTGATTTAACCATGGCCACTCGTGTACCTAATGATGTTCCAAGACAACCTCCGACCATAAATAGACCTCCAGAAAAGAGACAAAGGGTACCCTCTGCTTACAACCGATTCATCAAAGACGAGATCCAACGCATTAAGGCTGCCAATCCAGACATCTCTCATCGAGAAGCCTTCAGTGCTGCTGCTAAGAACAAAATGCATGAAGCATTATACATTAAAGGAGACGAGAGGTAA 558 42.83 MSSSSLPTTFSQLPPPPSDQLCYVHCNICDTVLAVSVPSTSLFKRVTVRCGYCANLLPVNMCGGMLLPSPSQFHGFTHSTTFFSPNTHNFLEEISNPNPNFLMNQTEGIDLTMATRVPNDVPRQPPTINRPPEKRQRVPSAYNRFIKDEIQRIKAANPDISHREAFSAAAKNKMHEALYIKGDER* 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24129827 24134466 + Chy6G125460.1 Chy06g02018 229727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g02018 185 PANTHER AXIAL REGULATOR YABBY 3 1 175 - -
Chy06g02018 185 MobiDBLite consensus disorder prediction 117 137 - -
Chy06g02018 185 CDD HMG-box 137 164 - -
Chy06g02018 185 SUPERFAMILY HMG-box 121 170 IPR036910 -
Chy06g02018 185 PANTHER PROTEIN YABBY 6-RELATED 1 175 IPR006780 GO:0007275
Chy06g02018 185 Pfam YABBY protein 17 175 IPR006780 GO:0007275
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy06g02018 Chy09g01118 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01726 Chy-Chr3:18753134 Chy06g02018 Chy-Chr6:24129827 8.70E-35 dispersed
Chy06g02018 Chy-Chr6:24129827 Chy10g00892 Chy-Chr10:14685669 7.89E-28 dispersed
Chy05g00195 Chy-Chr5:1593841 Chy06g02018 Chy-Chr6:24129827 2.55E-45 transposed
Chy06g02018 Chy-Chr6:24129827 Chy09g01118 Chy-Chr9:13448472 2.66E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18220 PF04690 YABBY 5.70E-59 CL0114 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g02018 K25796 - csv:101219601 346.665