Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g02021 ATGCAACACTCCCGCCGCGTGGCAGTGATCGGCGCCGGTGGCGCAGGCCTCATCTCCGCCCGCCAACTTTCCCGGGAGGGCCACCAAGTGGTGGTATTCGAACGGAATAATCAAATCGGAGGGGTCTGGGTGTATTCGCCCGAAATTGAATCCGACCCACTTGGAGTTGACCCGAATCGGACCCGAATACATAGCAGCCTCTACAAATCTCTACGAACCAATATCCCCAGAGAAGTCATGGGGGTCCGTGATTTCCCGTTTGTTCCTCGAGAAGGGGAGGATCGAGATCCGAGGCGATTTCCAAGTCATCCAGAGGTTTTAAAGTATTTGGAAGATTTCGCTAATGAATTTGGGATTTGTAAGTTGGTGAGATTTAGAACTGAGGTGGTGTTTGCTGGTTTGGAGAAGCTTGGGAAATGGAGGGTTGAATTCAGATGTGAAAATGGGGATGTTGATTATGACATTTTTGATGCTGTAGTTGTTTGTGTTGGGAATTTTTCGCAGCCTCGAGTAGCAGAGATTCCCGGGATTGATGGATGGCCTGGGGAACAAGTTCATAGTCACAACTATCGTGATCCCGAACCATTTCGCGGTAAGGTTGTTGTGTTGATAGGTTATTCTTCGAGTGGTACGGACATTTCTCAGGAGCTCATTGGGGTTGCCAAAGAAATTCATATTGCTTGCAGACCAGCTAAAACAGAGCCTTTGGACGAAAAATCAATTATTAGTAACGTCTCATTTCATCCAATGATCGAAAGTGTCCATAAAGATGGAACGGTGGTCTTTCAAGACGGGTGCATCGTTTCGGCTGATGTTATTCTGCATTGTACTGGGTACAAATATCATTTCCCGTTTCTTGAAACCAATGGCACTGTTACGGTGGACAACAACCGCGTAGGACCTCTTTTCAAGCATGTCTTCCCCCCAGCATTGGCCCCAGGGCTTTCCTTCGTTGGGTTACCATTTAAGGTTGTTCCTTTTGTCATATTTGAGCTTCAAAGCAATTGGATTGCTGGTGTTTTATCAAACAGGATTGCACTTCCATCGAAAGAGGAAATGTTGGCAGATGTTAAAGCTTTTTATGAAGAACTTGAAGCTCGTGGCAAGCCCAAGCATCGGACCCATAAATTGGGTGGTTATACGCCTGCTTACTGTAACTGGCTTGCAGCAACTTGTGGTTGTCCTCCATATGAAGAATGGAGAAAGGAAATGTTTGTTGCTACTGATATTAATAAAGTGGCCAATCTTGAGTCATACCGTGATGATTGGCATGACGATGGGTTGATTCGTCAAGCTTATGAAGAATTTGGCAAGTATACTACGAATGAAAGAAGTCAAAACCACTCGAATTTGAATGTTGCATAA 1365 45.42 MQHSRRVAVIGAGGAGLISARQLSREGHQVVVFERNNQIGGVWVYSPEIESDPLGVDPNRTRIHSSLYKSLRTNIPREVMGVRDFPFVPREGEDRDPRRFPSHPEVLKYLEDFANEFGICKLVRFRTEVVFAGLEKLGKWRVEFRCENGDVDYDIFDAVVVCVGNFSQPRVAEIPGIDGWPGEQVHSHNYRDPEPFRGKVVVLIGYSSSGTDISQELIGVAKEIHIACRPAKTEPLDEKSIISNVSFHPMIESVHKDGTVVFQDGCIVSADVILHCTGYKYHFPFLETNGTVTVDNNRVGPLFKHVFPPALAPGLSFVGLPFKVVPFVIFELQSNWIAGVLSNRIALPSKEEMLADVKAFYEELEARGKPKHRTHKLGGYTPAYCNWLAATCGCPPYEEWRKEMFVATDINKVANLESYRDDWHDDGLIRQAYEEFGKYTTNERSQNHSNLNVA* 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24153787 24157083 - Chy6G125490.1 Chy06g02021 229730

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g02021 454 SUPERFAMILY FAD/NAD(P)-binding domain 3 234 IPR036188 -
Chy06g02021 454 SUPERFAMILY FAD/NAD(P)-binding domain 250 426 IPR036188 -
Chy06g02021 454 Gene3D - 6 423 IPR036188 -
Chy06g02021 454 Pfam Flavin-binding monooxygenase-like 5 229 IPR020946 GO:0004499|GO:0050660|GO:0050661
Chy06g02021 454 Pfam Flavin-binding monooxygenase-like 237 378 IPR020946 GO:0004499|GO:0050660|GO:0050661
Chy06g02021 454 PIRSF FMO 3 234 IPR000960 GO:0050660|GO:0050661
Chy06g02021 454 PIRSF FMO 229 401 IPR000960 GO:0050660|GO:0050661
Chy06g02021 454 PRINTS Flavin-containing monooxygenase (FMO) signature 29 53 IPR000960 GO:0050660|GO:0050661
Chy06g02021 454 PRINTS Flavin-containing monooxygenase (FMO) signature 185 199 IPR000960 GO:0050660|GO:0050661
Chy06g02021 454 PRINTS Flavin-containing monooxygenase (FMO) signature 263 290 IPR000960 GO:0050660|GO:0050661
Chy06g02021 454 PRINTS Flavin-containing monooxygenase (FMO) signature 328 341 IPR000960 GO:0050660|GO:0050661
Chy06g02021 454 PRINTS Flavin-containing monooxygenase (FMO) signature 5 21 IPR000960 GO:0050660|GO:0050661
Chy06g02021 454 PRINTS Flavin-containing monooxygenase (FMO) signature 212 227 IPR000960 GO:0050660|GO:0050661
Chy06g02021 454 PANTHER FLAVIN-CONTAINING MONOOXYGENASE 3 440 - -
Chy06g02021 454 Gene3D - 173 276 IPR036188 -
Chy06g02021 454 PANTHER DIMETHYLANILINE MONOOXYGENASE 3 440 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g02021 - - - csv:101220318 897.116
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01230 Chy-Chr6:11176456 Chy06g02021 Chy-Chr6:24153787 2.87E-07 dispersed
Chy06g02021 Chy-Chr6:24153787 Chy06g02024 Chy-Chr6:24170294 0 dispersed
Chy11g01162 Chy-Chr11:17714981 Chy06g02021 Chy-Chr6:24153787 6.62E-13 dispersed
Chy06g02021 Chy-Chr6:24153787 Chy06g02022 Chy-Chr6:24160798 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g504 . . . . . . . . Cmo06g00787 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi07g01326 . . Cme06g02610 . . . . . . . . . . . Cma06g00767 . . Car16g01008 . . . . . . . . . . . . . . . . . . Chy06g02021 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002306 0 0 1 1 1 3 2 1 2 4 1 1 2 4 4 2 1 1 2 2 1 2 1 4 2 2 1 4 1 5 58