Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g02026 ATGTCGAGGACTATTGAAGAAGAAGAAGATCCTCGCATCAATGGCATCCGAACCAAAATTCGAGTGGTTCCTAATTTTCCAAAACCAGGTATACTGTTTCAGGACATCACGACTCTGTTACTTGAACCTAAAGCGTTCAAGGATACCATTGATTTGTTCGTTGAACGATACAAGGGCAAAAACATCTCCGTCGTTGCAGGAATTGAGGCTAGAGGGTTTATTTTTGGTCCTCCAATTGCTTTGGCTATTGGAGCCAAGTTTGTGCCCTTGAGGAAACCAAAGAAATTACCTGGTGATGTAATGCATGAAGAGTACGTTTTGGAATATGGAAGAGATTGCATAGAAATGCATGTTGGGGCTGTTGAGGCTGGGGAACGTGCTTTGGTTGTTGATGACTTGATTGCCACTGGTGGTACTCTCTCTGCAGCCATCAATTTACTTGAACGAGCGGGAGCCGAAGTGGTTGAATGTGCTTGTGTAATTGAATTACCAGAGTTGAAG 501 43.51 MSRTIEEEEDPRINGIRTKIRVVPNFPKPGILFQDITTLLLEPKAFKDTIDLFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGDVMHEEYVLEYGRDCIEMHVGAVEAGERALVVDDLIATGGTLSAAINLLERAGAEVVECACVIELPELK 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24202609 24208385 - Chy6G125540.1 Chy06g02026 229735

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g02026 167 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 8 167 - -
Chy06g02026 167 Gene3D - 3 167 IPR029057 -
Chy06g02026 167 Pfam Phosphoribosyl transferase domain 51 164 IPR000836 -
Chy06g02026 167 SUPERFAMILY PRTase-like 15 165 IPR029057 -
Chy06g02026 167 Hamap Adenine phosphoribosyltransferase [apt]. 16 167 IPR005764 GO:0003999|GO:0005737|GO:0006168
Chy06g02026 167 CDD PRTases_typeI 50 167 IPR000836 -
Chy06g02026 167 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 3-RELATED 8 167 - -
Chy06g02026 167 TIGRFAM apt: adenine phosphoribosyltransferase 17 167 IPR005764 GO:0003999|GO:0005737|GO:0006168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g02026 K00759 APRT, apt; adenine phosphoribosyltransferase [EC:2.4.2.7] - csv:101218731 330.102
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01586 Chy-Chr3:17886508 Chy06g02026 Chy-Chr6:24202609 2.43E-91 dispersed
Chy03g01111 Chy-Chr3:14450902 Chy06g02026 Chy-Chr6:24202609 1.20E-85 transposed
Chy06g02026 Chy-Chr6:24202609 Chy09g01111 Chy-Chr9:13361316 8.85E-101 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy09g01111 . 30 180 PRT Gene Family AT1G80050 75.5 4.6e-62 234.2
Chy03g01111 . 33 189 PRT Gene Family AT1G80050 72.2 9.0e-58 219.9
Chy06g02026 . 32 167 PRT Gene Family AT1G80050 77.2 4.5e-57 217.6
Chy03g01586 . 119 268 PRT Gene Family AT1G80050 70.7 6.5e-56 213.8
Chy03g01111 . 1 148 PRT Gene Family AT5G11160 80.4 8.8e-64 240.0
Chy09g01111 . 8 145 PRT Gene Family AT5G11160 76.1 1.5e-55 212.6
Chy03g01586 . 95 234 PRT Gene Family AT5G11160 72.9 9.7e-55 209.9
Chy06g02026 . 10 147 PRT Gene Family AT5G11160 72.5 2.4e-53 205.3
Chy03g01586 . 90 270 PRT Gene Family AT1G27450 82.3 1.1e-80 296.2
Chy09g01111 . 7 180 PRT Gene Family AT1G27450 73.6 1.3e-71 266.2
Chy06g02026 . 6 167 PRT Gene Family AT1G27450 77.8 9.9e-69 256.5
Chy03g01111 . 11 168 PRT Gene Family AT1G27450 72.2 1.8e-62 235.7
Chy11g00327 . 74 558 PRT Gene Family AT2G16570 85.0 1.0e-241 832.8
Chy11g00327 . 73 558 PRT Gene Family AT4G34740 85.4 1.6e-242 835.5
Chy11g00327 . 48 531 PRT Gene Family AT4G38880 72.1 5.0e-198 687.6
Chy03g01586 . 90 270 PRT Gene Family AT1G27450 82.3 1.1e-80 296.2
Chy09g01111 . 7 180 PRT Gene Family AT1G27450 73.6 1.3e-71 266.2
Chy06g02026 . 6 167 PRT Gene Family AT1G27450 77.8 9.9e-69 256.5
Chy03g01111 . 11 168 PRT Gene Family AT1G27450 72.2 1.8e-62 235.7
Chy09g01111 . 30 180 PRT Gene Family AT1G80050 75.5 4.6e-62 234.2
Chy03g01111 . 33 189 PRT Gene Family AT1G80050 72.2 9.0e-58 219.9
Chy06g02026 . 32 167 PRT Gene Family AT1G80050 77.2 4.5e-57 217.6
Chy03g01586 . 119 268 PRT Gene Family AT1G80050 70.7 6.5e-56 213.8
Chy06g02026 . 6 99 PRT Gene Family AT4G22570 87.2 3.7e-44 174.1
Chy09g01111 . 6 104 PRT Gene Family AT4G22570 81.8 6.4e-44 173.3
Chy03g01586 . 94 186 PRT Gene Family AT4G22570 80.6 1.6e-39 158.7
Chy06g02026 . 7 98 PRT Gene Family AT4G12440 87.0 4.6e-41 163.7
Chy09g01111 . 1 96 PRT Gene Family AT4G12440 83.3 1.3e-40 162.2
Chy03g01586 . 90 185 PRT Gene Family AT4G12440 79.2 6.2e-38 153.3
Chy03g01111 . 1 148 PRT Gene Family AT5G11160 80.4 8.8e-64 240.0
Chy09g01111 . 8 145 PRT Gene Family AT5G11160 76.1 1.5e-55 212.6
Chy03g01586 . 95 234 PRT Gene Family AT5G11160 72.9 9.7e-55 209.9
Chy06g02026 . 10 147 PRT Gene Family AT5G11160 72.5 2.4e-53 205.3
Chy03g00477 . 1 188 PRT Gene Family AT1G71750 64.8 4.4e-70 261.2
Chy06g01388 . 19 482 PRT Gene Family AT1G55810 73.3 3.0e-199 691.4
Chy06g01388 . 80 482 PRT Gene Family AT3G27440 75.4 8.3e-180 626.7
Chy06g01388 . 1 483 PRT Gene Family AT3G27190 86.4 1.8e-247 851.7
Chy08g00711 . 3 289 PRT Gene Family AT3G53900 66.6 3.9e-107 384.8
Chy06g01388 . 11 482 PRT Gene Family AT4G26510 75.4 8.6e-210 726.5
Chy06g01388 . 1 482 PRT Gene Family AT5G40870 86.3 7.0e-247 849.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000311 4 6 3 5 5 4 7 4 4 4 4 4 7 4 4 7 4 6 1 4 4 4 4 5 4 4 4 10 6 3 139