Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g02036 ATGATGGGTTCCAAAGCATCAGCCATGTTCTTAATTCTCTCAATCTTCATGGCCTTATCTTTGCCCCCAATTTATGCTTGCACTCCTTGCACTCAGCCCCACCCTCCTCAGCCCCCTTATCACCGCCCTTCCCACCCTAAAATTCCCCATCCAAAACCCCACCCTCCTCACCACGGCGGTGGAGGAGGCGGAGGCGGTGGCAGTCGTGGAGGTGGTGGAGGAGGTGGTGGCGGAGGTGGTGGCAGCCGTGGAGGTGGTGGTGGAGGTGGTGGAGGTGGCGGAGGTGGCGGAGGTGGCGGTGGACATCATCCCCATCCACCAATTGTAATTCCCCCACCAGTTATCTCCCCACCAGTGATAACCCCACCAGTGATAACCCCACCAGTGATAACCCCTCCAGTGATAACCCCTTCACCACCATCTACAACCTACCCTCCTTACACTAGCCCTCCTCCTAGTGGGGGTGGTGGAGGTGGCGGTGGAGGTGGTGGTGGACCAGGCTCAGGGCAATACCCTCCACCAGCGCCGCCGGTTCAACCGACATGTCCAATAGATGCATTGAAATTAGGGTTATGTGTGGATGTTCTTGGAGGGTTGGTGCATATTGGTTTAGGGAATCCAGTTGAGAATGCATGTTGTCCAGTGCTTGGAGGGCTATTGGAACTTGAAGCAGCAATATGTTTGTGCACAACTTTGAGGATTAAGCTTTTGAATCTCAATATATTCATTCCTTTGGCACTACAAGCTCTTATTACTTGTGGCAAGAATCCTCCTCCTGGCTTTGTTTGTCCTCCACTTTAG 801 53.56 MMGSKASAMFLILSIFMALSLPPIYACTPCTQPHPPQPPYHRPSHPKIPHPKPHPPHHGGGGGGGGGSRGGGGGGGGGGGGSRGGGGGGGGGGGGGGGGGGHHPHPPIVIPPPVISPPVITPPVITPPVITPPVITPSPPSTTYPPYTSPPPSGGGGGGGGGGGGPGSGQYPPPAPPVQPTCPIDALKLGLCVDVLGGLVHIGLGNPVENACCPVLGGLLELEAAICLCTTLRIKLLNLNIFIPLALQALITCGKNPPPGFVCPPL* 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24521322 24522122 - Chy6G125640.1 Chy06g02036 229745

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g02036 266 MobiDBLite consensus disorder prediction 131 177 - -
Chy06g02036 266 MobiDBLite consensus disorder prediction 34 114 - -
Chy06g02036 266 CDD HPS_like 181 263 IPR027923 -
Chy06g02036 266 Gene3D - 180 265 IPR036312 -
Chy06g02036 266 PANTHER - 2 265 - -
Chy06g02036 266 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 2 265 - -
Chy06g02036 266 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 184 265 IPR036312 -
Chy06g02036 266 Pfam Hydrophobic seed protein 181 264 IPR027923 -
Chy06g02036 266 MobiDBLite consensus disorder prediction 131 152 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g02036 - - - csv:101220939 195.282
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g02036 Chy-Chr6:24521322 Chy07g00490 Chy-Chr7:3917858 4.88E-34 dispersed
Chy06g02035 Chy-Chr6:24505869 Chy06g02036 Chy-Chr6:24521322 1.20E-16 tandem
Chy06g02036 Chy-Chr6:24521322 Chy06g02037 Chy-Chr6:24539204 1.38E-15 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g517 . . Bda06g00034 . . Bpe07g00169 . . Cmo06g00794 . . . . . . . . . . . . . . . Cla10g00268 Cam10g0276 Cec10g0286 Cco10g0280 Clacu10g0278 Cmu10g1118 Cre10g0527 Cone2ag0209 Cone16ag0834 Cone4ag0656 Cone7ag0615 Lsi07g01313 . . Cme06g02586 . . . . . . . Bma12g00636 . . . Cma06g00772 . Car06g00689 . Cpe08g00747 . . . . . . . . . . . . . . . . Csa03g00287 Chy06g02036 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000904 5 2 1 6 4 2 3 2 2 2 3 2 4 2 2 4 2 5 3 2 3 2 3 3 3 3 3 5 2 2 87