Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g02037 ATGGCTTCCAAAATTTCATCAACCACTTCCCTTCTCCTTCTTCTCAACCTCCTCTTCTTCACTATGGTCACCTCCACCTACGTCCCTTGCCCGCCGCCTCCACAGAAGCACCCCAAGGGCGTTCCCTCGAAGCAGCCAACACCACAGCCAAAGTGCCCAAAGGACACTCTCAAGCTCGGCGTTTGCGCTGACTTGCTCGACGGTCTAGTGCACGTCGTGATCGGCACATCACCGAAAACCCCATGTTGCACACTAATCCAGGACTTAGTTGATCTTGAAGCTGCTCTTTGTCTTTGTACCGTGGTTAAAGCAAAAGCCTTAGGGCTCAAAATTGACCTCTCAGTCTCCCTCAGCTTGCTCTTGAACTATTGTGGAAAGAAGGCTATGTATGGTCATTATGAAATGTCGTTTCTGTTGTACTGA 423 49.88 MASKISSTTSLLLLLNLLFFTMVTSTYVPCPPPPQKHPKGVPSKQPTPQPKCPKDTLKLGVCADLLDGLVHVVIGTSPKTPCCTLIQDLVDLEAALCLCTVVKAKALGLKIDLSVSLSLLLNYCGKKAMYGHYEMSFLLY* 141
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24539204 24539769 - Chy6G125650.1 Chy06g02037 229746

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g02037 140 SMART aai_6 52 133 IPR016140 -
Chy06g02037 140 PANTHER - 1 131 - -
Chy06g02037 140 Gene3D - 49 133 IPR036312 -
Chy06g02037 140 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 55 128 IPR036312 -
Chy06g02037 140 PANTHER - 1 131 - -
Chy06g02037 140 CDD HPS_like 50 128 IPR027923 -
Chy06g02037 140 Pfam Hydrophobic seed protein 52 131 IPR027923 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g02037 - - - csv:101217924 226.868
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy06g02037 Chy09g01096 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g02037 Chy-Chr6:24539204 Chy09g01104 Chy-Chr9:13280072 6.24E-28 dispersed
Chy06g02036 Chy-Chr6:24521322 Chy06g02037 Chy-Chr6:24539204 1.38E-15 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g518 Blo02g01047 . . . . . Bma07g01600 . Cmo06g00795 . . Cma15g01133 . . Sed03g1246 . . Bhi11g00206 Tan01g2018 Cmetu06g2397 . . Mch10g1550 . Cla10g00267 Cam10g0275 Cec10g0283 Cco10g0279 Clacu10g0277 Cmu10g1117 Cre10g0526 . . . . Lsi07g01312 Csa05g00414 Chy09g01096 Cme06g02585 . Blo19g00256 . . Bpe08g01433 . . Bma12g00161 . . Cmo15g01192 Cma06g00775 . . . . . Bhi12g00431 . . Lac11g2276 . . Lcy12g1820 Cla01g00386 Cam01g0403 Cec01g0395 Cco01g0416 Clacu01g0404 Cmu01g0385 Cre09g2123 Lsi09g00416 Csa03g00286 Chy06g02037 Cme09g01625
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000088 2 11 1 5 4 10 1 11 11 11 13 11 17 13 14 20 10 12 1 11 14 4 3 8 10 9 6 10 10 3 266