Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g02066 ATGGAAGATCCTCTTCAAAGATTCCAACTCCACTCTCAATCTTCATCTTCTTCATCAGATATCAAAAACTGCATCAAACAAAAAACCTCCAAGAAAGTTAAACTTGGAAACGACGACAAACACCCAACTTATCGGGGCGTTCGAATGCGACAGTGGGGAAAATGGGTTTCCGAAATCAGAGAACCAAAGAAGAAATCCAGAATTTGGTTAGGTACATTTTCCACTCCAGAAATGGCCGCTAGAGCTCACGACGTTGCCGCCAAAACGATCAAAGGTCATTCTGCTTACCTTAATTTCCCTGAATTGGCTCATCGTCTCCCTCGTCCAGCTAGTTCTTCTCCTAAAGACATTCGAGCCGCCGCTGCTAAAGCTGCCCTGTTTAATGATGAACAGAACCCCGGTGCGAAATCTGAATTGAATCTTAATTGCTGTGGCTCTTCTGCTGTTGCGGTCAAATCCGGTGGGGAAATTGATGATACTTTCTTTGATTTACCTGATCTGTTTATTGATGATCCTAATCATCAAATTGATACATTCTGTTTCTCGCAATTTGTTCCGATTGATGGTTTTGACTCTGTTTTTACACGGCCGTCGTCGCCATCGTCGTCCTCGGATTATTTCACTTACAGAGCTAGAATGGGTTTGTCAAAGGAAGAGGGGAATTTGTGGCTAAGCTTTAGTTGA 684 43.13 MEDPLQRFQLHSQSSSSSSDIKNCIKQKTSKKVKLGNDDKHPTYRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTPEMAARAHDVAAKTIKGHSAYLNFPELAHRLPRPASSSPKDIRAAAAKAALFNDEQNPGAKSELNLNCCGSSAVAVKSGGEIDDTFFDLPDLFIDDPNHQIDTFCFSQFVPIDGFDSVFTRPSSPSSSSDYFTYRARMGLSKEEGNLWLSFS* 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24840708 24843540 - Chy6G125940.1 Chy06g02066 229775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g02066 227 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Chy06g02066 227 PRINTS Ethylene responsive element binding protein signature 66 82 IPR001471 GO:0003700|GO:0006355
Chy06g02066 227 ProSiteProfiles AP2/ERF domain profile. 43 100 IPR001471 GO:0003700|GO:0006355
Chy06g02066 227 CDD AP2 44 102 IPR001471 GO:0003700|GO:0006355
Chy06g02066 227 MobiDBLite consensus disorder prediction 1 42 - -
Chy06g02066 227 Pfam AP2 domain 42 93 IPR001471 GO:0003700|GO:0006355
Chy06g02066 227 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 181 - -
Chy06g02066 227 SUPERFAMILY DNA-binding domain 43 101 IPR016177 GO:0003677
Chy06g02066 227 SMART rav1_2 43 106 IPR001471 GO:0003700|GO:0006355
Chy06g02066 227 Gene3D AP2/ERF domain 43 101 IPR036955 GO:0003700|GO:0006355
Chy06g02066 227 MobiDBLite consensus disorder prediction 7 24 - -
Chy06g02066 227 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 14 181 - -
Chy06g02066 227 MobiDBLite consensus disorder prediction 25 42 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00939 Chy-Chr4:13509679 Chy06g02066 Chy-Chr6:24840708 1.93E-37 dispersed
Chy06g00045 Chy-Chr6:339738 Chy06g02066 Chy-Chr6:24840708 7.32E-40 dispersed
Chy06g02066 Chy-Chr6:24840708 Chy11g01758 Chy-Chr11:23975040 7.80E-40 dispersed
Chy06g02066 Chy-Chr6:24840708 Chy05g01389 Chy-Chr5:17949100 6.78E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18223 PF00847 AP2 1.40E-13 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g02066 - - csv:101222736 373.244