Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g02070 ATGGAAGATTTTCTCGGGAAACAAACGGTTTATATTGTGGGAAAACTCATGGGGTGTTATGGTAAATTTGTGCAGAAGCAAAAGTTGGCGTTGGCGAAACAATTGGGTCTCCGGCCAAGACAAGTCGAAGTTTGGTTCCAAAATAGAAGAGCAAGGACAAAGTTGAAGCAAACGGAAGTAGATTGCGAATTCCTAAAGAGATGTTGTGAGAATCTAACGGAGGAGAATAGACGGTTGCAAAAAGAAGTACAAGAACTGAGAGCACTCAAACTTTCCCCACAGTTCTACATGCACATGACCCCACCCACCACCCTCACCATGTGCCCATCATGTGAGCGTGTCGCTGTCCCGCCCTCCTCCACATCAGCTCCCCAGCCCACCGTCACACGAATGGGCCAGGCCCAACCTCAGCCCCACCACGCTCGCCCTATCCACCACATCAACCCCTGGGCCTCCCCCATACCCACCCGGCCCTTCAACGCCCTCCACCCTCGCTCGTAA 501 52.1 MEDFLGKQTVYIVGKLMGCYGKFVQKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVAVPPSSTSAPQPTVTRMGQAQPQPHHARPIHHINPWASPIPTRPFNALHPRS* 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24888308 24889283 + Chy6G125980.1 Chy06g02070 229779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g02070 166 ProSitePatterns 'Homeobox' domain signature. 31 54 IPR017970 GO:0000981|GO:0006355
Chy06g02070 166 CDD homeodomain 25 57 IPR001356 GO:0003677
Chy06g02070 166 Coils Coil 55 92 - -
Chy06g02070 166 ProSiteProfiles 'Homeobox' domain profile. 26 56 IPR001356 GO:0003677
Chy06g02070 166 CDD bZIP 49 88 - -
Chy06g02070 166 SUPERFAMILY Homeodomain-like 26 64 IPR009057 -
Chy06g02070 166 Gene3D - 21 54 - -
Chy06g02070 166 Pfam Homeodomain 26 54 IPR001356 GO:0003677
Chy06g02070 166 PRINTS Lambda-repressor HTH signature 27 36 IPR000047 GO:0003677
Chy06g02070 166 PRINTS Lambda-repressor HTH signature 36 52 IPR000047 GO:0003677
Chy06g02070 166 PANTHER - 26 154 - -
Chy06g02070 166 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 26 154 - -
Chy06g02070 166 SMART halz 56 99 IPR003106 GO:0006355|GO:0043565
Chy06g02070 166 MobiDBLite consensus disorder prediction 116 134 - -
Chy06g02070 166 MobiDBLite consensus disorder prediction 116 166 - -
Chy06g02070 166 SMART HOX_1 1 60 IPR001356 GO:0003677
Chy06g02070 166 Pfam Homeobox associated leucine zipper 56 90 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00051 Chy-Chr6:369239 Chy06g02070 Chy-Chr6:24888308 3.00E-63 dispersed
Chy06g02070 Chy-Chr6:24888308 Chy07g00219 Chy-Chr7:1789671 1.44E-36 dispersed
Chy06g02070 Chy-Chr6:24888308 Chy01g01900 Chy-Chr1:24280237 3.67E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18225 PF02183 HALZ 1.60E-11 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g02070 K09338 - csv:101223208 291.582