Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g02072 ATGGCTGTTCGATTTTTGGGGCTTTTTTTATTTGAGGCTATGTATATTGAGGAACTGAAGGAGGAAGGAGAGTTGCAGAGTGGGGAAGAGGGAAATTCGGGTGTTATTGTTAGTAATTTGGAGAGTCAGAGCATTGTTAGGTCTGATGTGAAAAGGATCGTTGTTGGAGTTGGGGCTCGTGTACTTTTCTATCCCACTTTGCTTTATAATGTTTTCAGAAATAAGCTTCAGACGGAGTTTCGTTGGTGGGACAAGGTTGATGAGTTTATATTGTTAGGTGCTGTTCCATTCCCTGCTGATGTTCCTCGTTTGAAGGAGGCTGGCGTTGGAGGAGTGATAACACTAAACGAGCCATATGAGACTTTGGTTCCCTCAACTTTATATCGTGATCATGAAATTGATCATCTGACCATTCCCACTAGAGACTATTGCTTTGCACCTCTATTGAGTGACATTTGCCTTGCTGTAAATTTCATCCACAAAAATGCATCACTTGGACAGACTACATATGTTCATTGTAAAGCTGGACGAGGGCGTAGCACAACTGTTGTTATCTGCTATTTGGTGCAATACAAGCAAATGACGCCAGATGAAGCTTACAAGCATGTGAAATCAATCAGGCCAAGGGTGCTTTTAGCATCATCACAGTGGCAGGCTGTCCTGGAATTCTACCACCTGATTGTGCAGAAGGATGTTTCCTTCTGCCACATAGATGATCCACGAAAGGAAGTATCAGGATCGTTGCATGATCTTATTGCATTTGATGATAGTTCTGTAGTTGTTGTAAAAGAATCCGATCTGGATGGATATGACCAAAGTATCATCCAAAGTGACATGGGTGATATCTGGGCAGATTTAAGTGTAGTCTGCAGGGTTCGTGTTGCTGGTCAGGCAGCACTCACAAGAATCTCTTGTTTGTGGCTCAGCTATCGAGCAAAACACCATAGGCAGAAGATTTCAGGAGATGATCTAGGTGTCGGGAAGGGCTGTTCACTTAGTGCTACTCATTTGGAAGGGTTCAGCGTGGACATCCATGTCTATTAA 1044 43.1 MAVRFLGLFLFEAMYIEELKEEGELQSGEEGNSGVIVSNLESQSIVRSDVKRIVVGVGARVLFYPTLLYNVFRNKLQTEFRWWDKVDEFILLGAVPFPADVPRLKEAGVGGVITLNEPYETLVPSTLYRDHEIDHLTIPTRDYCFAPLLSDICLAVNFIHKNASLGQTTYVHCKAGRGRSTTVVICYLVQYKQMTPDEAYKHVKSIRPRVLLASSQWQAVLEFYHLIVQKDVSFCHIDDPRKEVSGSLHDLIAFDDSSVVVVKESDLDGYDQSIIQSDMGDIWADLSVVCRVRVAGQAALTRISCLWLSYRAKHHRQKISGDDLGVGKGCSLSATHLEGFSVDIHVY* 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24907271 24910419 + Chy6G126000.1 Chy06g02072 229781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g02072 347 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE DSP8-RELATED 14 347 - -
Chy06g02072 347 Gene3D Protein tyrosine phosphatase superfamily 82 232 IPR029021 -
Chy06g02072 347 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 150 218 IPR000387 GO:0016311|GO:0016791
Chy06g02072 347 SMART dsp_5 85 226 IPR020422 GO:0006470|GO:0008138
Chy06g02072 347 ProSiteProfiles Dual specificity protein phosphatase domain profile. 82 229 IPR020422 GO:0006470|GO:0008138
Chy06g02072 347 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 76 228 IPR029021 -
Chy06g02072 347 CDD PTPMT1 82 224 IPR044596 GO:0004721
Chy06g02072 347 Pfam Dual specificity phosphatase, catalytic domain 126 224 IPR000340 GO:0008138|GO:0016311
Chy06g02072 347 PANTHER - 14 347 - -
Chy06g02072 347 ProSitePatterns Tyrosine specific protein phosphatases active site. 171 181 IPR016130 GO:0016311|GO:0016791
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g01416 Chy-Chr5:18131957 Chy06g02072 Chy-Chr6:24907271 5.73E-104 dispersed
Chy06g02072 Chy-Chr6:24907271 Chy10g00338 Chy-Chr10:8582992 3.11E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g02072 - - csv:101222975 656.366