Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g02078 ATGATGTACGGACAAATTAACTGTTGTGAATCCGATTTTGTTCTTCTTGAAACCATTCGTCGTCATTTATTGGGAGATTCAGAGGCTTTCCGATGTGGGAATTTCTCCCTTTCTGGAACTACCTCCCCTGTTTTCTGTCGGAGCTCAAGTTTCGGCAGCTTGTACCCTTGTTTAACTGAAAATTGGGGCGATTTGCCTCTCAAAGAGGATGATTCCGAAGACATGGTCCTCGCCGGCGTCCTCCGCGACGCCGTCAATGTCGGTTGGGTACCGTCGCTTGAAACTTTCAATTTTGGCTTCTCTGATGTCAAGCCCGAGCCGGAGATTCTCTCTCCGGTCAACGTCTTGCCGGAAGTTAAGGTTCCGTCCACGGAGGTGGCTGCGGCCTTGCCGGCGGTCGTTCCGGCCAAGGGGAAGCATTACCGGGGTGTACGACAGCGGCCGTGGGGTAAGTTTGCGGCGGAGATTCGAGACCCGGCGAAGAACGGAGCTCGGGTTTGGCTTGGGACGTTTGAAACCGCGGAGGATGCGGCGCTTGCTTATGACCGGGCTGCTTATCGGATGCGTGGCTCCAAAGCTCTTCTTAATTTTCCACTTCGAGTTAATTCGGGTGAACCCGATCCGGTTAGAGTGACGTCGAAGCGATCGTCACCTCGATCGTCCCCGGAACCTACTTCGTCGTTGTCGTCGGTAGAGAGTGGGTCACCTAAGCGACGGAAGAAAGCGGAAGGCACCGCGGTGTCACCCGCTTTAGCTTCGCCGGAGTTGAATCAATTAGTGGTGGGGACGAATGGATTGCAAGTGGAAGCTGATGTGGCAAAATGTACAAGTGGCGAGTAA 840 53.81 MMYGQINCCESDFVLLETIRRHLLGDSEAFRCGNFSLSGTTSPVFCRSSSFGSLYPCLTENWGDLPLKEDDSEDMVLAGVLRDAVNVGWVPSLETFNFGFSDVKPEPEILSPVNVLPEVKVPSTEVAAALPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSKALLNFPLRVNSGEPDPVRVTSKRSSPRSSPEPTSSLSSVESGSPKRRKKAEGTAVSPALASPELNQLVVGTNGLQVEADVAKCTSGE* 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24971488 24972327 + Chy6G126060.1 Chy06g02078 229787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g02078 279 Pfam AP2 domain 140 190 IPR001471 GO:0003700|GO:0006355
Chy06g02078 279 PRINTS Ethylene responsive element binding protein signature 164 180 IPR001471 GO:0003700|GO:0006355
Chy06g02078 279 PRINTS Ethylene responsive element binding protein signature 141 152 IPR001471 GO:0003700|GO:0006355
Chy06g02078 279 PANTHER DNA-BINDING DOMAIN 41 257 IPR044808 GO:0003700|GO:0009873
Chy06g02078 279 SUPERFAMILY DNA-binding domain 140 200 IPR016177 GO:0003677
Chy06g02078 279 Gene3D AP2/ERF domain 139 201 IPR036955 GO:0003700|GO:0006355
Chy06g02078 279 ProSiteProfiles AP2/ERF domain profile. 140 198 IPR001471 GO:0003700|GO:0006355
Chy06g02078 279 MobiDBLite consensus disorder prediction 204 256 - -
Chy06g02078 279 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1-RELATED 41 257 - -
Chy06g02078 279 SMART rav1_2 140 204 IPR001471 GO:0003700|GO:0006355
Chy06g02078 279 MobiDBLite consensus disorder prediction 209 233 - -
Chy06g02078 279 CDD AP2 139 198 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g02078 Chy-Chr6:24971488 Chy09g01053 Chy-Chr9:12974431 1.55E-104 dispersed
Chy06g02077 Chy-Chr6:24966336 Chy06g02078 Chy-Chr6:24971488 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18228 PF00847 AP2 1.20E-14 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g02078 K09286 - csv:101203663 493.426