Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g02089 ATGGGAGTATCTGCTGTCAAGCTGTTAAATATGCACCCCTACCCTCCTGGATTGCAGCATGTTTTAGAATTTATAATTCATTTGCACAAGCACAATCCTCAACGTGTGGAGATCGTCATTATATTGCTAATAGCAGCAAGCAAGGATTTTTCCAATAAGTTTCAGATGCCTAAAAGCATTGAGATCCTAAAGGCAAGAATTGAAACAGGCACACCACTCTGGCGTAATGGGCCTCCTGACAAGCCAGTATTGTGCAATGCCTGTGGGTCTCGATGGAGGACAAAGGGAACTTTAGCAAACTATACCCCTCTTCATGCACGGGCGGATCCTGATGAGTTTGAGGATAAAAGGATCTCTCGGTGGAAGAACTTGTCAATGTGTAAGAACAAAGAAGTGAAACTGCTTAAAAGAAAACAGTATCAAGATAATGGACTTGTGGTTGGGGTTCTTCCTGATCATGCTCAGAGCTTTCACAAGGTAGTGGATGAAGATACAAGTAATAGATCAAGTTCTGGATCAGCCATATCGAACTCTGAGAGCTGTGCACAATTTGGTGGCGCAGATGCTAGTGATCTGACAGGTCCCTCACAATCAACAGCGTGGGAGGCAATGGTGCCTTCTAGAAAGAGGACCTGTGTCGGTCGTCCAAAGTCTACTGCAGTTGAGAAACTCACTAAAGATCTATACACCATTTTACGCGAACAACAGTCTTACTTTTCTGGATCTTCCGAGGAGGATTTGCTTTTCGAGAATGAAACTCCGATGGTCTCCGTAGAGATAGGACATGGAAGCGTTCTCATGAGGCATCCGAGTTCAATTGCTCGAGAAGAGGAATCAGAAGCAAGCTCAATTTCAGTTGATAATAAACAATTCTCTTTAAATGAGGTTCATTCAGAGTCGTCCATCCTTCCTGTACATTATGAAACTCAGAACAAGTTTGTAAATTTTTCTACTCTTGGAATTGGGAGAAAGCACTCTACTGGACAAGGGTTCTTGAATGAGCAAATTAAAAGGGACAGGCCTCAATCGGAAAGAATGCAAGCACTTGGAAATCGCAATTCCCCTCTCTGTAATATAGATCTAACTGACATTCTAAACTTCAGAGAGTTTACGAAACAATTGACGAGTGAAAATCAGCAAGAATTGATGAAGTTTCTGCCTTCTGTTGATACTGAAGAGCTTCCAGACAGCTTGAATAGCATGTTTGAAAGTCCTCAGTTCAAGGAGAATTTGAATTCTTTTAAGCAGCTGCTCACTGAAGGAGTCTTTGATTTCTCCTTTCCGGGTGCAAAAAGAGAAGACTGCAAGATTTTGAGTAGGCTGGTGTTGTTGGATTTGTCAAAATCAAAATGGGTGGAACGATATAATTTACTCAAGAAATGCAGTAGTGGAGAGTCTGTCCAAGGTTTTGCTGCTGCATCAAGTAGCCTTACGAATGGCAAGAGAGTGCTTGATGGCCAGAACAAAAAGCTTTCAGAAACCAGGACAACAATGAAGAGTCCCAAAAGGGTGATAACGAAGACAAGCACGGAAAGCAAGGAACTTGTTGACAGTGATGGTTCTTGCTTCAGTCCAAGAAGTTTATTTGCTTTGCCTTCTGATGGAGGTTCCTTCACACTGGAAGCGCTGCATTTTGATGAGGATAGTTCTGACCAAGATCTCCTACTGGATGTGAGGTCAAACAGTTCCTTTCCACAAGCAGAGCTTCTTCATCCAGCCCTGAGTTTTGTTGCTCAACAGGCAAGCAATAGTAGTAGCTCGGTAAATCTTCGACTTATGCATCGCTGA 1788 42.67 MGVSAVKLLNMHPYPPGLQHVLEFIIHLHKHNPQRVEIVIILLIAASKDFSNKFQMPKSIEILKARIETGTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEFEDKRISRWKNLSMCKNKEVKLLKRKQYQDNGLVVGVLPDHAQSFHKVVDEDTSNRSSSGSAISNSESCAQFGGADASDLTGPSQSTAWEAMVPSRKRTCVGRPKSTAVEKLTKDLYTILREQQSYFSGSSEEDLLFENETPMVSVEIGHGSVLMRHPSSIAREEESEASSISVDNKQFSLNEVHSESSILPVHYETQNKFVNFSTLGIGRKHSTGQGFLNEQIKRDRPQSERMQALGNRNSPLCNIDLTDILNFREFTKQLTSENQQELMKFLPSVDTEELPDSLNSMFESPQFKENLNSFKQLLTEGVFDFSFPGAKREDCKILSRLVLLDLSKSKWVERYNLLKKCSSGESVQGFAAASSSLTNGKRVLDGQNKKLSETRTTMKSPKRVITKTSTESKELVDSDGSCFSPRSLFALPSDGGSFTLEALHFDEDSSDQDLLLDVRSNSSFPQAELLHPALSFVAQQASNSSSSVNLRLMHR* 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25081245 25086476 + Chy6G126170.1 Chy06g02089 229798

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g02089 595 Pfam Asx homology domain 341 424 IPR028020 -
Chy06g02089 595 CDD ZnF_GATA 71 107 IPR000679 GO:0006355|GO:0043565
Chy06g02089 595 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 352 461 IPR044867 -
Chy06g02089 595 PANTHER OSJNBB0038F03.10 PROTEIN 69 594 IPR044589 -
Chy06g02089 595 MobiDBLite consensus disorder prediction 161 180 - -
Chy06g02089 595 PANTHER GATA TRANSCRIPTION FACTOR 26 69 594 - -
Chy06g02089 595 Pfam GATA zinc finger 69 97 IPR000679 GO:0006355|GO:0043565
Chy06g02089 595 MobiDBLite consensus disorder prediction 166 180 - -
Chy06g02089 595 Gene3D - 67 139 IPR013088 GO:0006355|GO:0008270
Chy06g02089 595 Gene3D - 345 428 IPR038108 -
Chy06g02089 595 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 69 101 - -
Chy06g02089 595 SMART GATA_3 64 111 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g02089 - - - cmo:103490848 1052.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00025 Chy-Chr4:262511 Chy06g02089 Chy-Chr6:25081245 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy03g01261 CCT,ECH 116 369 C2C2-Gata Transcription Factor Family AT5G25830 57.4 1.0e-71 267.3
Chy02g00597 CCT,ECH 86 257 C2C2-Gata Transcription Factor Family AT4G34680 50.3 3.0e-37 152.5
Chy07g01272 CCT,ECH 25 185 C2C2-Gata Transcription Factor Family AT5G66320 62.3 7.2e-49 191.4
Chy07g01272 CCT,ECH 25 185 C2C2-Gata Transcription Factor Family AT3G51080 62.4 1.0e-44 177.6
Chy02g00597 CCT,ECH 95 256 C2C2-Gata Transcription Factor Family AT4G36240 52.9 1.5e-40 163.3
Chy07g01272 CCT,ECH 32 178 C2C2-Gata Transcription Factor Family AT4G36240 53.3 1.5e-37 153.3
Chy03g01261 CCT,ECH 118 369 C2C2-Gata Transcription Factor Family AT4G32890 53.0 1.3e-60 230.3
Chy04g00025 . 1 514 C2C2-Gata Transcription Factor Family AT4G17570 52.5 5.3e-136 481.5
Chy06g02089 . 69 571 C2C2-Gata Transcription Factor Family AT4G17570 52.9 1.4e-128 456.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001256 2 2 1 2 3 2 5 2 2 2 2 2 4 2 1 4 2 3 4 2 2 2 2 2 2 2 2 7 3 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18229 PF13919 ASXH 1.30E-09 No_clan Chy TF