Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g02089 ATGGGAGTATCTGCTGTCAAGCTGTTAAATATGCACCCCTACCCTCCTGGATTGCAGCATGTTTTAGAATTTATAATTCATTTGCACAAGCACAATCCTCAACGTGTGGAGATCGTCATTATATTGCTAATAGCAGCAAGCAAGGATTTTTCCAATAAGTTTCAGATGCCTAAAAGCATTGAGATCCTAAAGGCAAGAATTGAAACAGGCACACCACTCTGGCGTAATGGGCCTCCTGACAAGCCAGTATTGTGCAATGCCTGTGGGTCTCGATGGAGGACAAAGGGAACTTTAGCAAACTATACCCCTCTTCATGCACGGGCGGATCCTGATGAGTTTGAGGATAAAAGGATCTCTCGGTGGAAGAACTTGTCAATGTGTAAGAACAAAGAAGTGAAACTGCTTAAAAGAAAACAGTATCAAGATAATGGACTTGTGGTTGGGGTTCTTCCTGATCATGCTCAGAGCTTTCACAAGGTAGTGGATGAAGATACAAGTAATAGATCAAGTTCTGGATCAGCCATATCGAACTCTGAGAGCTGTGCACAATTTGGTGGCGCAGATGCTAGTGATCTGACAGGTCCCTCACAATCAACAGCGTGGGAGGCAATGGTGCCTTCTAGAAAGAGGACCTGTGTCGGTCGTCCAAAGTCTACTGCAGTTGAGAAACTCACTAAAGATCTATACACCATTTTACGCGAACAACAGTCTTACTTTTCTGGATCTTCCGAGGAGGATTTGCTTTTCGAGAATGAAACTCCGATGGTCTCCGTAGAGATAGGACATGGAAGCGTTCTCATGAGGCATCCGAGTTCAATTGCTCGAGAAGAGGAATCAGAAGCAAGCTCAATTTCAGTTGATAATAAACAATTCTCTTTAAATGAGGTTCATTCAGAGTCGTCCATCCTTCCTGTACATTATGAAACTCAGAACAAGTTTGTAAATTTTTCTACTCTTGGAATTGGGAGAAAGCACTCTACTGGACAAGGGTTCTTGAATGAGCAAATTAAAAGGGACAGGCCTCAATCGGAAAGAATGCAAGCACTTGGAAATCGCAATTCCCCTCTCTGTAATATAGATCTAACTGACATTCTAAACTTCAGAGAGTTTACGAAACAATTGACGAGTGAAAATCAGCAAGAATTGATGAAGTTTCTGCCTTCTGTTGATACTGAAGAGCTTCCAGACAGCTTGAATAGCATGTTTGAAAGTCCTCAGTTCAAGGAGAATTTGAATTCTTTTAAGCAGCTGCTCACTGAAGGAGTCTTTGATTTCTCCTTTCCGGGTGCAAAAAGAGAAGACTGCAAGATTTTGAGTAGGCTGGTGTTGTTGGATTTGTCAAAATCAAAATGGGTGGAACGATATAATTTACTCAAGAAATGCAGTAGTGGAGAGTCTGTCCAAGGTTTTGCTGCTGCATCAAGTAGCCTTACGAATGGCAAGAGAGTGCTTGATGGCCAGAACAAAAAGCTTTCAGAAACCAGGACAACAATGAAGAGTCCCAAAAGGGTGATAACGAAGACAAGCACGGAAAGCAAGGAACTTGTTGACAGTGATGGTTCTTGCTTCAGTCCAAGAAGTTTATTTGCTTTGCCTTCTGATGGAGGTTCCTTCACACTGGAAGCGCTGCATTTTGATGAGGATAGTTCTGACCAAGATCTCCTACTGGATGTGAGGTCAAACAGTTCCTTTCCACAAGCAGAGCTTCTTCATCCAGCCCTGAGTTTTGTTGCTCAACAGGCAAGCAATAGTAGTAGCTCGGTAAATCTTCGACTTATGCATCGCTGA 1788 42.67 MGVSAVKLLNMHPYPPGLQHVLEFIIHLHKHNPQRVEIVIILLIAASKDFSNKFQMPKSIEILKARIETGTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEFEDKRISRWKNLSMCKNKEVKLLKRKQYQDNGLVVGVLPDHAQSFHKVVDEDTSNRSSSGSAISNSESCAQFGGADASDLTGPSQSTAWEAMVPSRKRTCVGRPKSTAVEKLTKDLYTILREQQSYFSGSSEEDLLFENETPMVSVEIGHGSVLMRHPSSIAREEESEASSISVDNKQFSLNEVHSESSILPVHYETQNKFVNFSTLGIGRKHSTGQGFLNEQIKRDRPQSERMQALGNRNSPLCNIDLTDILNFREFTKQLTSENQQELMKFLPSVDTEELPDSLNSMFESPQFKENLNSFKQLLTEGVFDFSFPGAKREDCKILSRLVLLDLSKSKWVERYNLLKKCSSGESVQGFAAASSSLTNGKRVLDGQNKKLSETRTTMKSPKRVITKTSTESKELVDSDGSCFSPRSLFALPSDGGSFTLEALHFDEDSSDQDLLLDVRSNSSFPQAELLHPALSFVAQQASNSSSSVNLRLMHR* 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25081245 25086476 + Chy6G126170.1 Chy06g02089 229798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g02089 595 Pfam Asx homology domain 341 424 IPR028020 -
Chy06g02089 595 CDD ZnF_GATA 71 107 IPR000679 GO:0006355|GO:0043565
Chy06g02089 595 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 352 461 IPR044867 -
Chy06g02089 595 PANTHER OSJNBB0038F03.10 PROTEIN 69 594 IPR044589 -
Chy06g02089 595 MobiDBLite consensus disorder prediction 161 180 - -
Chy06g02089 595 PANTHER GATA TRANSCRIPTION FACTOR 26 69 594 - -
Chy06g02089 595 Pfam GATA zinc finger 69 97 IPR000679 GO:0006355|GO:0043565
Chy06g02089 595 MobiDBLite consensus disorder prediction 166 180 - -
Chy06g02089 595 Gene3D - 67 139 IPR013088 GO:0006355|GO:0008270
Chy06g02089 595 Gene3D - 345 428 IPR038108 -
Chy06g02089 595 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 69 101 - -
Chy06g02089 595 SMART GATA_3 64 111 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00025 Chy-Chr4:262511 Chy06g02089 Chy-Chr6:25081245 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18229 PF13919 ASXH 1.30E-09 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g02089 - - cmo:103490848 1052.35