Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g02111 ATGGTGGAATCGGTTGAGTTACCGAGTCGACTCGGGATTCTTCCTTTCAGAAACAAGGTTCTTTTACCTGGCGCCATTATTCGGATTCGATGCACTTCATCCAGCAGTGTGAAATTGGTGGAGCAGGAGTTGTGGCAGCGAGAAGAGAAAGGATTGATTGGTATTCTTCCAGTTCGAGATGATGCTGATGCACCGGCAATTGTCCCTGTGTTATCTCAAGGTGTGGGAAGTGATTCTGGAGATCGTAGCTCAAGGGTTCAATCTGGAACCTCTGACTCACAAAGAGTAGATGGGAAAAATCATCAGGAAGTTATTCAATGGCATTCAAGGGGTGTTGCTGCTCGTGCCTTGCAGCTGTCTAGAGGAGTGGAGAAACCGAGTGGAAGGGTGACATATACCGTTGTGCTAGAAGGTTTATGTAGATTTACTGTTCAGGAACTTAGCACCAGAGGAACATATTATACTGCACGAATATCACCTTCAGAAATGACAAAGGCAGAGATGGAGCAAGTGGAGCAAGATCCAGACTTTATTTCATTATCTCGACAATTCAAAGCTACTGCAATGGAGCTTATATCCGTTCTTGAACAGAAACAAAAAACTGGAGGGCGGACAAAAGTTCTTTTGGAGACAGTTCCAGTTCATAAACTGGCTGATATATTTGTTGCCAGTTTTGAGATGAGCTTTGAAGAGCAACTATCTATGCTGGATTCAGTTGATTTAAGAGTAAGGCTTTCAAAAGCAATGGAGTTAGTTGACAGGCATTTACAGTCGATACGTGTAGCAGAGAAGATTACGCAGAAAGTAGAAGGACAGTTATCAAAATCACAGAAAGAATTCCTTTTGCGTCAGCAGATGAGAGCCATAAAGGAGGAGCTTGGTGATGACGACGATGAAGATGATTTGGTTGCCCTAGAAAGAAAGATGCAAAGTGCTGAAATGCCTGCTAATATCTGGAAGCATGCTCAGAGGGAGTTGAGGAGCCTTAAAAAAATGCAACCTCAACAACCTGGGTATAATAGCTTGCGAGTTTACCTTGAGCTTCTTGCTGACCTTCCATGGAAGAAGGCTACTGAAGAAAATGAATTAGACTTGAAAGCCGCAAAGGAACGTCTTGACAGTGACCATTATGGTTTGGTCAAGGTCAAGCAACGAATTATTGAATATCTTGCTGTTCGGAAGCTTAAGCCAGATGCAAGAGGGCCTGTGCTGTGCTTTGTAGGGCCACCAGGTGTGGGAAAGACATCTTTGGCATCATCTATTGCTGCTGCTCTGGGCAGAAAATTTGTACGTATATCCCTGGGTGGTGTTAAAGATGAGGCTGATATTAGAGGACATAGGAGGACCTACATTGGAAGCATGCCAGGGCGTCTTATTGATGGACTAAAGAGAGTATCTGTTTGCAACCCAGTCATGCTATTAGATGAGATTGACAAGACAGGTTCTGATGTGCGAGGCGATCCAGCTTCAGCTCTACTGGAGGTTCTTGACCCTGAACAGAACAAAAAGTTCAGTGATCATTATTTGAATGTCCCATTTGACCTTTCAAAGGTCGTCTTTGTGGCCACTGCTAACAGAATGCAGCCCATACCTCCTCCTCTTCTAGATAGGATGGAAGTCATTGAGCTGCCCGGATACACACCAGAGGAAAAACTTAAGATTGCAATGCACCATTTGATTCCACGAGTTTTGGAACAGCATGGGCTAAGTGCTGAATTTCTTCAAATTCCAGAGGCTATGGTTAAACTTGTGGTTCAAAGATACACTAGAGAGGCTGGTGTACGAAATCTTGAGAGGAATTTGGCTGCGTTGGCTCGTGCTGCTGCTGTTAGAGTTGTGGAAAGAGATCAAACTGTCCCATTGAATAAAGATGTGCATCAGGTTTCCTCTCCTCTGTTGGAAAACAGACTTTCTGATGGAGCTGAAGTAGATATGGAGGTCATCCCAATTGGAGCAGATCATGAGATACCGAACCAATTGAGGATAGCCTCTCCGTTGGTTGTTGACGAGGCTATGCTTGAAAAAGTGCTTGGGCCTCCTAGGTTTGATGATAGAGAAGCAGCCGAGCGGGTTATATCACCTGGGATATCTGTTGGATTGGTTTGGACTGCCGTTGGGGGAGAGGTTCAGTTTGTGGAGGCCACAGCAATGTCCGGGAAGGGGGAATTGCATCTCACCGGCCAGCTTGGTGATGTCATTAAAGAATCAGCTCAGATAGCCCTTACCTGGGTCCGAGCAAGGGCAACAGATCTGAAACTTGCATCAGCTTGTGAATCTAATCTTTTGGAGGGTCGTGATATTCATATACATTTTCCTGCTGGTGCGGTGCCTAAGGATGGGCCTTCAGCTGGTGTGACTCTTGTAACTGCCCTCGTCTCTTTGTTTGGTCAGAAGAGGGTTAGGGCTGATACTGCAATGACAGGAGAAATGACTCTGAGGGGTCTTGTTCTACCTGTTGGTGGCATCAAGGACAAGATATTAGCTGCGCATCGTTATGGGATAAAGAGAGTTATTCTGCCAGAGAGAAATTTGAAAGATCTAGTGGAAGTTCCTTCGGGCGTGCTTGCTAGTTTGGAGATATTACTAGCGAAGCGGATGGAAGATGTACTGGAGCAGGCTTTTGAAGATTATTGTTGTGGAAGAAGGAAGGTGAGCCCAATTCGCTCCAGAAAGTTACCATTGGTTTTGCACAAAAACCATGGCTCAAAGAAAATTGGGGAAACAAAGGAAGAAGCGAAGAAAGGGAATACTATGGTTGTTAAAGAGTTCCAAATCAGTGATAGAAACATTGTAATCCATGAGCTTGACGACCTCTATGATTCCACAACTGGAAGAGTGCTCACCGGTTCCTGGGTCTGGAACTCGGCCTTCGTCCTAGCCAAGTGGATGGCGACTCAGTGCAACCTATTTGACTTCGACTTCCGGCAGAAGAACGTGATCGAGCTTGGCGCTGGGGCTGGACTTCCTGGTTTGACGGCAGCTTTACTTGGTGCTAATCGTGTTGTACTTACCGACATAAAGCCATTGCTTTCTGGGTTGTTGGAGAATGTAGATGCTAATGGACTTGGGGATCGAGTAGAAGTAAGGGAACTCGTGTGGGGCTCGAACGACTTGGCAAGTCAAGCAAATGAGTTGGGGGAGTTTGACCTGATTTTGATGTCAGATTTGTTCTATGACTCGGAGGAAATGCCCCATCTAGCACAACTACTAAAGATCATCTCTGGGACGAATACCAAAATCTGGGCAGCATCGGAGATCCGACCATGGACTATTGAATGCATTACAGAGTTGATAAATCAAGGATTCAAGATCACAGAGTCCCCAGTTCAACATGATGAATCTCATGAGGAAGAAGACAACCATAAGATTTTCGACTCATTTTCTATATTCCATCTCAGACAAGAAGAAGAAAGAAACCTTTGA 3423 45.05 MVESVELPSRLGILPFRNKVLLPGAIIRIRCTSSSSVKLVEQELWQREEKGLIGILPVRDDADAPAIVPVLSQGVGSDSGDRSSRVQSGTSDSQRVDGKNHQEVIQWHSRGVAARALQLSRGVEKPSGRVTYTVVLEGLCRFTVQELSTRGTYYTARISPSEMTKAEMEQVEQDPDFISLSRQFKATAMELISVLEQKQKTGGRTKVLLETVPVHKLADIFVASFEMSFEEQLSMLDSVDLRVRLSKAMELVDRHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDDDDEDDLVALERKMQSAEMPANIWKHAQRELRSLKKMQPQQPGYNSLRVYLELLADLPWKKATEENELDLKAAKERLDSDHYGLVKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAAALGRKFVRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVSVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKKFSDHYLNVPFDLSKVVFVATANRMQPIPPPLLDRMEVIELPGYTPEEKLKIAMHHLIPRVLEQHGLSAEFLQIPEAMVKLVVQRYTREAGVRNLERNLAALARAAAVRVVERDQTVPLNKDVHQVSSPLLENRLSDGAEVDMEVIPIGADHEIPNQLRIASPLVVDEAMLEKVLGPPRFDDREAAERVISPGISVGLVWTAVGGEVQFVEATAMSGKGELHLTGQLGDVIKESAQIALTWVRARATDLKLASACESNLLEGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFGQKRVRADTAMTGEMTLRGLVLPVGGIKDKILAAHRYGIKRVILPERNLKDLVEVPSGVLASLEILLAKRMEDVLEQAFEDYCCGRRKVSPIRSRKLPLVLHKNHGSKKIGETKEEAKKGNTMVVKEFQISDRNIVIHELDDLYDSTTGRVLTGSWVWNSAFVLAKWMATQCNLFDFDFRQKNVIELGAGAGLPGLTAALLGANRVVLTDIKPLLSGLLENVDANGLGDRVEVRELVWGSNDLASQANELGEFDLILMSDLFYDSEEMPHLAQLLKIISGTNTKIWAASEIRPWTIECITELINQGFKITESPVQHDESHEEEDNHKIFDSFSIFHLRQEEERNL* 1141
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25315016 25329081 + Chy6G126390.1 Chy06g02111 229820

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g02111 1140 Pfam Lysine methyltransferase 948 1087 IPR019410 -
Chy06g02111 1140 PANTHER ATP DEPENDENT LON PROTEASE FAMILY MEMBER 1 882 IPR027065 GO:0004176|GO:0004252|GO:0005524|GO:0030163
Chy06g02111 1140 SUPERFAMILY PUA domain-like 11 253 IPR015947 -
Chy06g02111 1140 SMART AAA_5 400 545 IPR003593 -
Chy06g02111 1140 Gene3D - 162 297 - -
Chy06g02111 1140 ProSiteProfiles Lon N-terminal domain profile. 11 254 IPR003111 -
Chy06g02111 1140 Pfam ATP-dependent protease La (LON) substrate-binding domain 13 254 IPR003111 -
Chy06g02111 1140 SUPERFAMILY Ribosomal protein S5 domain 2-like 694 874 IPR020568 -
Chy06g02111 1140 Gene3D - 693 880 IPR014721 -
Chy06g02111 1140 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 352 618 IPR027417 -
Chy06g02111 1140 Pfam Lon protease (S16) C-terminal proteolytic domain 668 875 IPR008269 GO:0004176|GO:0004252|GO:0006508
Chy06g02111 1140 SMART lon_5 10 254 IPR003111 -
Chy06g02111 1140 TIGRFAM lon: endopeptidase La 13 874 IPR004815 GO:0004176|GO:0005524|GO:0006508
Chy06g02111 1140 ProSiteProfiles Lon proteolytic domain profile. 691 876 IPR008269 GO:0004176|GO:0004252|GO:0006508
Chy06g02111 1140 Hamap Lon protease homolog 2, peroxisomal [LONP2]. 3 886 IPR027501 GO:0004252|GO:0006515
Chy06g02111 1140 Gene3D - 2 160 IPR046336 -
Chy06g02111 1140 CDD AAA 385 546 - -
Chy06g02111 1140 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 967 1072 IPR029063 -
Chy06g02111 1140 Gene3D Vaccinia Virus protein VP39 908 1125 IPR029063 -
Chy06g02111 1140 Gene3D - 365 543 IPR027417 -
Chy06g02111 1140 Pfam ATPase family associated with various cellular activities (AAA) 404 541 IPR003959 GO:0005524|GO:0016887
Chy06g02111 1140 MobiDBLite consensus disorder prediction 71 99 - -
Chy06g02111 1140 Gene3D - 544 682 - -
Chy06g02111 1140 MobiDBLite consensus disorder prediction 76 95 - -
Chy06g02111 1140 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 694 710 - -
Chy06g02111 1140 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 806 825 - -
Chy06g02111 1140 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 829 847 - -
Chy06g02111 1140 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 776 795 - -
Chy06g02111 1140 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 408 427 - -
Chy06g02111 1140 Gene3D - 304 352 - -
Chy06g02111 1140 PANTHER LON PROTEASE HOMOLOG 2, PEROXISOMAL 1 882 - -
Chy06g02111 1140 CDD AdoMet_MTases 978 1071 - -
Chy06g02111 1140 ProSitePatterns ATP-dependent serine proteases, lon family, serine active site. 779 787 IPR008268 GO:0004176|GO:0004252|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g02111 K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] - csv:101213865 1644.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g01043 Chy-Chr5:15019259 Chy06g02111 Chy-Chr6:25315016 3.74E-151 dispersed
Chy06g02111 Chy-Chr6:25315016 Chy11g00838 Chy-Chr11:11901368 4.41E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g598 Blo02g01004 . . Bda08g00617 Bpe05g00539 . . . . Cmo16g01138 . . . . . Cpe14g00899 . . . . . . . . Cla10g00191 Cam10g0197 Cec10g0203 Cco10g0204 Clacu10g0201 Cmu10g1045 Cre10g0451 . . . Cone9ag0624 . . . Cme06g02504 . . . . . . Bma05g00396 . . . . . Cma16g01088 . Car16g01030 . . . . . . . . . . . . . . . . . . Chy06g02111 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008731 0 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 35