Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g02112 ATGGATTCGCAACAGAACAATTTGTTTGAAACCGCATCTCAACCCGACACCGCTAACGATGCTTACACATTCCTTGAGTTCAACACACAGGGGGAGGACTTCGATTACCCTGAATTTCGCGACCCTATTAGGTCCCCTGTAGCCTGGCCTACTCCTTCTGATTCGTTAGCGGATCATACGGACCGTGGTGGCGGGTCCGATCACCAGTCTGATGCGTCTCCGGTTTCCGCTGCACCTGGAAGTGCCACCAAAGGACGGACTGGAGGAGGTTCGGGGAATACTGGCGGTAATAATCAAATGGTTGATGCATTGGCAGCCGGGATGAGTGGGTTGACGTTTGAGGATACTGGGGATGATGATAATTATGAGTTTGGAAAAGGGAATTTCACGGAGCATGCTTGTAGGTATTGTGGGGTGTCGAACCCGGCTTGTGTTGTGAGGTGTAATGTACCCTCGTGTCGTAAGTGGTTCTGCAATTCGCGAGGGAACACGTCTGGGTCGCATATTGTGAATCATCTGGTCCGGGCAAAGCATAAGGAAGTTTGTCTTCACAAAGACAGTCCTCTTGGAGAAACAATTCTGGAATGTTACAATTGTGGTTGCCGAAATGTATTCCTCCTTGGATTTATTTCTGCAAAGACAGAAAGCGTGGTTGTTCTGCTCTGTAGGGAACCTTGCTTAAGTGTAAATGCTCTCAAGGATATGAATTGGGACTTGAGTCAGTGGTGCCCTCTCATTGATGATAGGTGCTTCTTGCAGTGGCTGGTTAAGATTCCTTCTGAGCAAGAGCAGTTGAGGGCCCGGCAAATTAGTGCACAACAAATAAATAAAATTGAGGAACTTTGGAAGACAAACCCAGATGCATCCCTTGAAGATCTTGAAAAACCTGGTGTGGATGATGAACCACAGCCTGTAGCATTGAAATATGAAGATGCTTATCAGTATCAAAACGTATTTGCACCTCTTATCAAGCTTGAAGCTGACTACGATAAAATGATGAAAGAATCTCAGAGCAAGGATAATGTCACTGTACGTTGGGACATTGGCCTTAACAAGAAGAGGATAGCTTATTTTGTGTTTCCAAAGGAGGACAATGAATTGCGTCTGGTACCTGGAGATGAGTTGAGATTACGTTATTCTGGTGATGCAGCTCATCCAGCTTGGCATTCTGTTGGTCATGTGATCAAGCTAACTGCACAGGAAGAGGTTGCACTTGAGCTTCGTGCAAGCCAGGGGGTCCCAGTTGATGTAGTCCATGGTTTTAGTGTTGATTTTGTGTGGAAGAGTACAAGCTTCGACCGAATGCAGGGAGCTATGAAGACATTTGCTGTTGATGAGACCAGTGTTAGTGGTTATATCTACCATCACTTATTAGGACATGAAGTGGAGGTCCAGATGGTCCGCAATACGCTTCCTCGTCGTTTTGGTGCTCCCGGTCTCCCAGAGCTCAATGCATCTCAAGTATTTGCTGTCAAAAGTGTTCTTCAGAAGCCAATAAGCTTGATTCAGGGACCTCCGGGCACTGGAAAAACTGTAACTTCTGCTGCCATTGTATATCATATGGCCAAACAAGGCCAAGGGCAGGTACTGGTCTGTGCCCCTAGTAATGTGGCTGTGGACCAGCTGGCAGAGAAGATAAGTGCAACTGGATTGAAGGTTGTTAGGCTATGTGCAAAATCAAGGGAAGCTGTAAGTTCTCCTGTGGAACACTTAACCCTTCATTATCAGGTTCGACATCTTGACACATCTGAAAGAAGTGAACTTCATAAGTTGCAACAATTGAAAGATGAGCAAGGGGAGTTGTCCAGCAGTGATGAGAAAAAATATAAGGCCCTTAAGAGAGCAACAGAGAGGGAAATTTCACAGAGTGCAGATGTTATTTGCTGCACATGTGTGGGTGCCGGAGACCCACGCTTGTCAAATTTTAGATTTCGTCAGGTTCTTATTGACGAGTCTACTCAGGCCACAGAACCTGAATGTCTCATTCCTCTTGTTCTTGGAGCGAAGCAGGCTGTTCTTGTTGGTGACCATTGCCAACTGGGACCTGTCATTATGTGTAAAAAAGCAGCACGTGCAGGGCTGGCTCAATCCCTCTTTGAACGTCTTGTTCTTCTTGGTGTGAAGCCAATTAGATTGCAGGTCCAATATCGTATGCACCCATCGCTTTCTGAATTTCCTTCTAACAGCTTCTATGAGGGCACACTACAAAATGGAGTTACCATCAACGAAAGGCAATCAACAGGCATTGACTTCCCATGGCCTGTTCCCAACCGTCCAATGTTCTTCTATGTTCAGATGGGACAAGAGGAGATAAGTGCCAGTGGAACTTCCTACCTAAATAGGACTGAGGCAGCAAATGTAGAAAAAATTGTGACCACTTTTTTAAGGAGTGGCGTAGTCCCTAGTCAGATTGGAGTTATCACACCGTATGAGGGGCAAAGAGCTTACATCGTTAACTATATGTCAAGAAATGGTGCTCTCAGACAGCAACTTTACAAAGAAATTGAGGTTGCAAGCGTGGATTCATTTCAAGGAAGGGAAAAAGATTATATCATATTGTCATGTGTGAGGAGCAATGAACATCAGGGCATTGGATTTCTTAATGATCCTCGCAGGCTCAATGTGGCTTTAACACGAGCTCGATATGGTATCGTCATTCTAGGAAACCCAAAGGTTTTGAGCAAACAACCACTGTGGAATAGCTTATTGACGCATTACAAGGAACACGAGTGCTTGGTTGAGGGCCCTCTGAATAACTTGAAACAAAGCATGATTCAATTTCAGAAGCCTAAAAAGATATACAATGATCGACGTCTTTTCTTTGCTGGTGGGCCTGGAGTTGTGCCAAATGATAATTTTGGACCTGTTGCTCCATCCGGCCCTAATGCTGATAGAAGAAGTAGTCGTGGTAGAGGTTCGTACTTTCCTCCTCACCTGCCGAATGGTGCCCAAAAGCCTGGTGTGCATGCATCTGGTTATCCCATGCCTCGAGTTCCCCTCCCCTCATTTCACGGCGGTCCCCCACAGCCATACGCAATTCCAACTCGTGGAGCTGTACATGGACCAGTTGGTGCTGTTCCTCATGTTCCTCAACCAGGAAGTAGGGGTTTTGGGGCAGGGCGGGGAAATGCAGGTGCTCCTATTGGGAGTCAGCTTCCAAATCAGCAAGGCTCTCAACAAAATATTGGAAATCTCGGTTCCGCTTTTAACTTTCCTGGTTTAGAGAGTCCCAATAGCCAACCATCAGTGGGTGGTCCTTTGTCCCAACTCGGGTTTGTTAACAACATGCCTGTTCAGCCACCTACTCAAACATTCCGCGATGGGTACTCCATGGGAGGGATTTCCCAGGACTTCTTGGGCGATGACTTTAAAAGCCAGGGATCACATGTTCCTTATAACGTCACTGATTTCTCCACCCAGGCATCTCAAACTGGTTATCCCATTGATTATGTTGGTCAAGGAGGGCAGGGTGGCTTTCCAGGGAGCTTCCTGAACCAGAATTCTCAATCTGGATATTCCCGTTTTGGAACAGGAAATGATTTCATGTCACAGGATTACATGAACCATGGTTCACAAGGTTTATTTACTCAAGTTGGTTTCAGCGATCCCTCACTGGATGAAGCATCCCAAAGTCACTACAATGTGACCAATGCAAACCCACTACAGTCTCAGCAGGGCATGATGAATTCTCTCTACTCCCAGCCCTTTGCACATTACAATACACAGCCTTCAACCCTGCAGGCCCCACCACAGCAGCAGTCTCAGCAGGGACAGAGCTCCCAAAATCAGAAAATTCACTTTAGTGGTTGA 3810 46.22 MDSQQNNLFETASQPDTANDAYTFLEFNTQGEDFDYPEFRDPIRSPVAWPTPSDSLADHTDRGGGSDHQSDASPVSAAPGSATKGRTGGGSGNTGGNNQMVDALAAGMSGLTFEDTGDDDNYEFGKGNFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKIEELWKTNPDASLEDLEKPGVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTVRWDIGLNKKRIAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWHSVGHVIKLTAQEEVALELRASQGVPVDVVHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSERSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLSNFRFRQVLIDESTQATEPECLIPLVLGAKQAVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSTGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMIQFQKPKKIYNDRRLFFAGGPGVVPNDNFGPVAPSGPNADRRSSRGRGSYFPPHLPNGAQKPGVHASGYPMPRVPLPSFHGGPPQPYAIPTRGAVHGPVGAVPHVPQPGSRGFGAGRGNAGAPIGSQLPNQQGSQQNIGNLGSAFNFPGLESPNSQPSVGGPLSQLGFVNNMPVQPPTQTFRDGYSMGGISQDFLGDDFKSQGSHVPYNVTDFSTQASQTGYPIDYVGQGGQGGFPGSFLNQNSQSGYSRFGTGNDFMSQDYMNHGSQGLFTQVGFSDPSLDEASQSHYNVTNANPLQSQQGMMNSLYSQPFAHYNTQPSTLQAPPQQQSQQGQSSQNQKIHFSG* 1270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25330110 25340121 - Chy6G126400.1 Chy06g02112 229821

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g02112 1269 Pfam RNA helicase UPF1, 1B domain 337 426 IPR040812 -
Chy06g02112 1269 CDD ZBD_UPF1-like 133 255 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Chy06g02112 1269 CDD 1B_UPF1-like 338 425 IPR040812 -
Chy06g02112 1269 Gene3D - 717 928 IPR027417 -
Chy06g02112 1269 Pfam AAA domain 583 685 IPR041677 GO:0004386
Chy06g02112 1269 Gene3D - 338 426 - -
Chy06g02112 1269 CDD DEXXQc_UPF1 482 717 - -
Chy06g02112 1269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 479 912 IPR027417 -
Chy06g02112 1269 Pfam RNA helicase (UPF2 interacting domain) 132 285 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Chy06g02112 1269 Pfam Type III restriction enzyme, res subunit 486 550 IPR006935 GO:0003677|GO:0005524|GO:0016787
Chy06g02112 1269 PANTHER REGULATOR OF NONSENSE TRANSCRIPTS 1-LIKE PROTEIN 108 1045 - -
Chy06g02112 1269 MobiDBLite consensus disorder prediction 1048 1085 - -
Chy06g02112 1269 Gene3D - 446 716 IPR027417 -
Chy06g02112 1269 CDD SF1_C_Upf1 718 907 IPR041679 -
Chy06g02112 1269 MobiDBLite consensus disorder prediction 1 100 - -
Chy06g02112 1269 MobiDBLite consensus disorder prediction 951 994 - -
Chy06g02112 1269 MobiDBLite consensus disorder prediction 1 26 - -
Chy06g02112 1269 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 491 623 IPR014001 -
Chy06g02112 1269 PANTHER DNA2/NAM7 HELICASE FAMILY 108 1045 IPR045055 -
Chy06g02112 1269 Gene3D - 568 620 - -
Chy06g02112 1269 MobiDBLite consensus disorder prediction 1035 1085 - -
Chy06g02112 1269 Pfam AAA domain 695 890 IPR041679 -
Chy06g02112 1269 MobiDBLite consensus disorder prediction 1237 1269 - -
Chy06g02112 1269 MobiDBLite consensus disorder prediction 86 100 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g02112 K14326 UPF1, RENT1; regulator of nonsense transcripts 1 [EC:3.6.4.13 5.6.2.3] - csv:101214107 2506.09
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00916 Chy-Chr1:8527134 Chy06g02112 Chy-Chr6:25330110 8.31E-45 transposed
Chy01g01118 Chy-Chr1:12783598 Chy06g02112 Chy-Chr6:25330110 7.54E-48 transposed
Chy01g01203 Chy-Chr1:14226620 Chy06g02112 Chy-Chr6:25330110 1.96E-06 transposed
Chy01g02098 Chy-Chr1:25694091 Chy06g02112 Chy-Chr6:25330110 4.30E-39 transposed
Chy02g00136 Chy-Chr2:968660 Chy06g02112 Chy-Chr6:25330110 6.08E-44 transposed
Chy04g01743 Chy-Chr4:23788890 Chy06g02112 Chy-Chr6:25330110 9.84E-59 transposed
Chy07g00700 Chy-Chr7:6807389 Chy06g02112 Chy-Chr6:25330110 1.21E-43 transposed
Chy09g00939 Chy-Chr9:12151728 Chy06g02112 Chy-Chr6:25330110 4.86E-61 transposed
Chy10g00026 Chy-Chr10:883536 Chy06g02112 Chy-Chr6:25330110 1.29E-37 transposed
Chy10g00057 Chy-Chr10:1456279 Chy06g02112 Chy-Chr6:25330110 3.47E-06 transposed
Chy10g00088 Chy-Chr10:2289100 Chy06g02112 Chy-Chr6:25330110 2.37E-09 transposed
Chy10g01344 Chy-Chr10:17730989 Chy06g02112 Chy-Chr6:25330110 2.00E-27 transposed
Chy06g00300 Chy-Chr6:2006618 Chy06g02112 Chy-Chr6:25330110 5.21E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g599 . . . . . . Bma07g00979 Bma14g00130 Cmo06g00686 Cmo16g01137 . . . . . Cpe14g00898 . Bhi11g00106 . . . . Mch10g1617 . Cla10g00190 Cam10g0195 Cec10g0201 Cco10g0202 Clacu10g0199 Cmu10g1044 Cre10g0450 Cone8ag0446 Cone12ag0435 . . Lsi07g01234 . . Cme06g02503 Blo03g00825 Blo19g00160 Bda07g00115 Bda09g00693 Bpe08g00863 Bpe11g00354 . . . . . Cma06g00659 Cma16g01087 . Car16g01029 . . . . . . . . . . . . . . . . . Csa03g00208 Chy06g02112 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004846 3 2 2 2 2 1 2 1 1 1 1 1 2 1 0 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 40