Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g02116 ATGGTTTGCAATGCTAATGATTTACATGGGTGGAAAGATTTTCCAAAGGGGCTTAGAGTTCTCCTCCTTGATGGAGACACCAGTTCTGCTGCTGAGATAAAAACAAAGCTTGAGGAAATGGAGTATGTTGTTGTGACGTACTGCAATGAGAATGATGCATTGTCAGCCATTTCAAGCAAACCCGAAACTTTTCATGTCGCCATTGTGGAGGTAACGACAAGCAACCATGAAGGCAATTTTAAGTTTCTTGAAGCTGCCAAGGACTTGCCTACCATTATGATTTCAAATATTCATTGCCTAAGCACGATGATGAAGTGCATAGCGCTTGGTGCGATGGAGTTCCTTCAGAAACCGCTCTCTGATGACAAATTGAGGAATATTTGGCAACATGTTGTTCATAAGGCATTCAATGCAGGCGGTAACGCCTTCCCCAATTCTCTAAAGCCTATTAAAGAATCCGTTGTCTCCATGCTGCATCTAGAATTAGAAAACAGTGAAAACGAGAATCAAGCCGAAAAGAAGTTAGAAATATTGAGCGGCGATGATGACAACAATCATGAACTACTGGAAGGAAGTGATAAGTATCCTGCTCCTTCAACTCCTCAGCAGAAGCATGGAATGCGACTTGTCGACGATGGTGACTGCCAGGATCAATTGAACAGTTCGCTTGAGAAAGAGTGCGGGGAGCAAGATGGGGAGTCTAAATCCGTCGAAACTACTTGTATAAATTCACTTGTTGAAGGTACTTCTCAAGTGGAGAACTCTCAGTTACCTGACCGAGAAGCAGTAAAAGAGGAAGAGAACTCTGCTGATGGTTGTGGGGCTGCGAGTAACATTGATCATGATACACATGATCAAGACAACATTAGCAGTTCCGAGAAAAACAAGAGCATACCATGTGGTCTCAGTAATCCTTGTGGGACAAAAGTTAGTAGGAAGAAGCTGAAGGTAGACTGGACACCCGAACTGCACCGAAAATTTGTACAGGCAGTGGAACAACTAGGAGTGAATCAAGCAATTCCTTCTCGAATTCTGGAGCTGATGAAAGTTGAAGGCTTGACAAGGCATAATGTAGCAAGTCACCTGCAGAAGTATCGTATGCATAAGAGACACATCTTGCCAAAAGAAGAAGATGGGAGTTGGTCTCATTCAAAGGATCCAATGAGGAAGAACTACTATCCACAAAGACCTGTGATGGCCTTCCCCCCTCCCTATCATTCTCATATAATGCCAGTTGCTCCTATCTACCCGCCGTGGGGTCACATGGCTTGCCCCTCGCCTGGTGTCCAAATGTGGGTACCACCCGGCTATCCACCATGGCGACCACCGGAAATTTGGCCTTGGAAGTCATATCCCGGGATGCATGCCGATACATGGGGTTGTCCTGTGACACCACCTCCTCATAGCCCTCTCTCTTCTCATCCTCAACATATTTCAGGATTTGAAAACGCCGATCCATACGATAAAAGCTACAGCATTGCATTCAGTCCTATCGATCTTCAATTGGCTGATGAAGAAATTGACAAAGTGGTGAAAGAGGCAATCAGCAAGCCATGGTTACCATTGCCTTTGGGGTTAAAGCCACCTTCAACAGAAAGTGTACTATCAGAGCTCTCAAAACAAGGCATCTCAACCGTTCCTTCTCACATCAACGGCTCTCAACTGATCCAATGA 1674 44.86 MVCNANDLHGWKDFPKGLRVLLLDGDTSSAAEIKTKLEEMEYVVVTYCNENDALSAISSKPETFHVAIVEVTTSNHEGNFKFLEAAKDLPTIMISNIHCLSTMMKCIALGAMEFLQKPLSDDKLRNIWQHVVHKAFNAGGNAFPNSLKPIKESVVSMLHLELENSENENQAEKKLEILSGDDDNNHELLEGSDKYPAPSTPQQKHGMRLVDDGDCQDQLNSSLEKECGEQDGESKSVETTCINSLVEGTSQVENSQLPDREAVKEEENSADGCGAASNIDHDTHDQDNISSSEKNKSIPCGLSNPCGTKVSRKKLKVDWTPELHRKFVQAVEQLGVNQAIPSRILELMKVEGLTRHNVASHLQKYRMHKRHILPKEEDGSWSHSKDPMRKNYYPQRPVMAFPPPYHSHIMPVAPIYPPWGHMACPSPGVQMWVPPGYPPWRPPEIWPWKSYPGMHADTWGCPVTPPPHSPLSSHPQHISGFENADPYDKSYSIAFSPIDLQLADEEIDKVVKEAISKPWLPLPLGLKPPSTESVLSELSKQGISTVPSHINGSQLIQ* 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25364694 25368538 - Chy6G126440.1 Chy06g02116 229825

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g02116 557 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 554 IPR044825 GO:0003700|GO:0045893
Chy06g02116 557 SMART REC_2 18 128 IPR001789 GO:0000160
Chy06g02116 557 Pfam Myb-like DNA-binding domain 317 366 IPR001005 -
Chy06g02116 557 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 311 370 IPR017930 -
Chy06g02116 557 Gene3D - 18 142 - -
Chy06g02116 557 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Chy06g02116 557 MobiDBLite consensus disorder prediction 180 219 - -
Chy06g02116 557 Gene3D - 310 372 - -
Chy06g02116 557 SUPERFAMILY Homeodomain-like 312 371 IPR009057 -
Chy06g02116 557 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 314 369 IPR006447 GO:0003677
Chy06g02116 557 SUPERFAMILY CheY-like 16 134 IPR011006 -
Chy06g02116 557 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR2 1 554 - -
Chy06g02116 557 MobiDBLite consensus disorder prediction 246 300 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g02116 - - - csv:101215069 1072.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g02116 Chy-Chr6:25364694 Chy11g00670 Chy-Chr11:8310539 2.50E-30 dispersed
Chy04g00056 Chy-Chr4:603158 Chy06g02116 Chy-Chr6:25364694 4.84E-158 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g607 . Blo03g00110 . . . Bpe07g00227 . . . Cmo16g01131 . . . . . Cpe14g00895 Cpe05g00201 . . . . . . . Cla10g00185 Cam10g0191 Cec10g0196 Cco10g0198 Clacu10g0195 Cmu10g1040 Cre10g0445 . . . . . . . . . . . . . . . Bma12g00227 . . . . Cma16g01084 . . . . . . . . . . . . . . . . . . . . Chy06g02116 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001240 1 4 1 2 1 2 1 2 2 2 2 2 8 2 2 8 2 2 5 2 3 2 2 2 2 2 2 2 6 1 77
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18232 PF00249 Myb_DNA-binding 6.10E-09 CL0123 Chy TF