Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g02132 ATGGAAGAAAGTAAAAACCATCTTTCTGAACAAAATACAAAGGGGTTTGCTAAAAGCACCAAGGATCAAAAAGAAAAACTAAATGTGTATGTCTGGGACATGGATGAGACCATCATCCTGCTCAAGTCTTTGTTGGATGGGACATATGCTAAGGCTTTTGGTGGTTCAAAGGATATTAAAAGGGGTGAAGAACTTGGCAAAATGTGGGAGAAGGAGATTCTCGATCTGTGTGATCATTTCTTCTTCTATGAACAAATAGAAAACTATAACCAACCCTTTCTTGATGCATTGAATGAATATGACGATGGTCGCGATCTTTCTAATTATGATTTTGATCAAGATGGTTTTGGTCCACCATGTGATGATGTAAACAAAAGAAAATTGGCTTTTAGGCAACGCGCAATAACCAATAAGTACAAAGAGGGCCTGCAGAAGATCTTTGATCAACAGAAGATGAAACGCTGGGAAGAGTTATATGAAATGACTGATGTCTATACAGATAGATGGTTCTCCTCAGCACGAGCTTTCTTGGAGGAGTGTTCAATTTCAGATGAACCACCACTTGTGTCTGCTGATCAGACATCCAACAGTACTTCTACAAGTTCTCAGCATGTTAATATCTTGGTGACTTCTGGAGCATTGATACCCAGCCTTGTGAAGTGTTTACTATTTCAACTCGATCATCTAATAACACCTGGAAATGTCTACAGTTCGTGGGAAGTGGAAAAAGTGCAATGTTTCCAGTGGATCAAGGAGCGTTTTGACAAGCCAAATGTTCGTTTCTGTGCAATAGGCAATGGATGGGAAGAGTGTGAAGCTGCACAGTCCTTGAAATGGCCATTTGTTAAGATTGATCTGCAACCTGGAAGTCTTCACAGGTTCCCTGGTCTGTCTTTGAAAACAATAGGCTTTTACTTCTCTGTTATTTATGGTTGTCAAAACCAAATAATGTGCTCTGGATGTAAAAATCTGTTGATCTATCCTGCTGGAGCTACCTCCATTTGCTGTGCTCTTTGCCATGCTGTAACTCCTGTTCCAACCTCTGGCTTAACGATGGCTCGGCTGGTGTGTAGTGGGTGCTACACCCTGCTCATGTACAGTCGTGGGGCGACAAGTGTACAATGTTCTTGTTGTCGCACCATAAATGCAGCTTCTAAAGCAAATCAGATGGCTCACATCAACTGTGGGAAGTGTAGAGTGCTGCTGATGTACCAATGTGAAGCACATTCTGTTAAATGTACAGTTTGCAATTCTGTCACCTCAGTTGGGATTTTGAGAAATCAGAGAGAAAGAGAGATAATTATGCAGTCTGCCATGGAGAAGCTGAGTAACATGGGAAGTGTTGCTAAAGAAAAGCTCAAAATTTGTAGAGCCAAACTCGACGAGAAGGTGGAGAAAGCTTCGGTGAAGACAGCAGAGGAGAGGAAGATCGTGGAGGAGAGAAGAAAAGCAGCAACGGCGGAGGCAAAGCGGGAGCTACACGAGGCGAAAGCCAGACATGCAGCTCAAAAGCTAAGGAATAGGAAATCACATGTACTTGGTGGCCATCTACACCATGAATCAACTATGGAGGGCGGTGCCGTCACACATCTTGGAGGAGCAACAAATGTTCCAGCTTATCCTATAACCAGCCCGGAGGGGTACCATCCCGGACATAAAATTTAA 1665 42.82 MEESKNHLSEQNTKGFAKSTKDQKEKLNVYVWDMDETIILLKSLLDGTYAKAFGGSKDIKRGEELGKMWEKEILDLCDHFFFYEQIENYNQPFLDALNEYDDGRDLSNYDFDQDGFGPPCDDVNKRKLAFRQRAITNKYKEGLQKIFDQQKMKRWEELYEMTDVYTDRWFSSARAFLEECSISDEPPLVSADQTSNSTSTSSQHVNILVTSGALIPSLVKCLLFQLDHLITPGNVYSSWEVEKVQCFQWIKERFDKPNVRFCAIGNGWEECEAAQSLKWPFVKIDLQPGSLHRFPGLSLKTIGFYFSVIYGCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTINAASKANQMAHINCGKCRVLLMYQCEAHSVKCTVCNSVTSVGILRNQREREIIMQSAMEKLSNMGSVAKEKLKICRAKLDEKVEKASVKTAEERKIVEERRKAATAEAKRELHEAKARHAAQKLRNRKSHVLGGHLHHESTMEGGAVTHLGGATNVPAYPITSPEGYHPGHKI* 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25635128 25643853 + Chy6G126600.1 Chy06g02132 229841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g02132 554 Pfam LSD1 zinc finger 318 342 IPR005735 -
Chy06g02132 554 Pfam LSD1 zinc finger 357 381 IPR005735 -
Chy06g02132 554 Pfam LSD1 zinc finger 395 419 IPR005735 -
Chy06g02132 554 TIGRFAM EYA-cons_domain: EYA conserved domain 27 302 IPR006545 GO:0007275
Chy06g02132 554 Pfam Late embryogenesis abundant (LEA) group 1 435 504 IPR005513 GO:0009793
Chy06g02132 554 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 355 382 IPR005735 -
Chy06g02132 554 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 315 344 IPR005735 -
Chy06g02132 554 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 392 422 IPR005735 -
Chy06g02132 554 Gene3D - 28 294 IPR038102 -
Chy06g02132 554 Coils Coil 470 497 - -
Chy06g02132 554 PANTHER DEVELOPMENTAL PROTEIN EYES ABSENT 9 313 - -
Chy06g02132 554 PANTHER EYES ABSENT 9 313 IPR028472 GO:0004725
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g00935 Chy-Chr12:14725466 Chy06g02132 Chy-Chr6:25635128 4.25E-08 transposed
Chy04g00074 Chy-Chr4:784259 Chy06g02132 Chy-Chr6:25635128 4.69E-15 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18233 PF03760 LEA_1 8.10E-18 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g02132 - - cmo:103490796 620.542