Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g02132 ATGGAAGAAAGTAAAAACCATCTTTCTGAACAAAATACAAAGGGGTTTGCTAAAAGCACCAAGGATCAAAAAGAAAAACTAAATGTGTATGTCTGGGACATGGATGAGACCATCATCCTGCTCAAGTCTTTGTTGGATGGGACATATGCTAAGGCTTTTGGTGGTTCAAAGGATATTAAAAGGGGTGAAGAACTTGGCAAAATGTGGGAGAAGGAGATTCTCGATCTGTGTGATCATTTCTTCTTCTATGAACAAATAGAAAACTATAACCAACCCTTTCTTGATGCATTGAATGAATATGACGATGGTCGCGATCTTTCTAATTATGATTTTGATCAAGATGGTTTTGGTCCACCATGTGATGATGTAAACAAAAGAAAATTGGCTTTTAGGCAACGCGCAATAACCAATAAGTACAAAGAGGGCCTGCAGAAGATCTTTGATCAACAGAAGATGAAACGCTGGGAAGAGTTATATGAAATGACTGATGTCTATACAGATAGATGGTTCTCCTCAGCACGAGCTTTCTTGGAGGAGTGTTCAATTTCAGATGAACCACCACTTGTGTCTGCTGATCAGACATCCAACAGTACTTCTACAAGTTCTCAGCATGTTAATATCTTGGTGACTTCTGGAGCATTGATACCCAGCCTTGTGAAGTGTTTACTATTTCAACTCGATCATCTAATAACACCTGGAAATGTCTACAGTTCGTGGGAAGTGGAAAAAGTGCAATGTTTCCAGTGGATCAAGGAGCGTTTTGACAAGCCAAATGTTCGTTTCTGTGCAATAGGCAATGGATGGGAAGAGTGTGAAGCTGCACAGTCCTTGAAATGGCCATTTGTTAAGATTGATCTGCAACCTGGAAGTCTTCACAGGTTCCCTGGTCTGTCTTTGAAAACAATAGGCTTTTACTTCTCTGTTATTTATGGTTGTCAAAACCAAATAATGTGCTCTGGATGTAAAAATCTGTTGATCTATCCTGCTGGAGCTACCTCCATTTGCTGTGCTCTTTGCCATGCTGTAACTCCTGTTCCAACCTCTGGCTTAACGATGGCTCGGCTGGTGTGTAGTGGGTGCTACACCCTGCTCATGTACAGTCGTGGGGCGACAAGTGTACAATGTTCTTGTTGTCGCACCATAAATGCAGCTTCTAAAGCAAATCAGATGGCTCACATCAACTGTGGGAAGTGTAGAGTGCTGCTGATGTACCAATGTGAAGCACATTCTGTTAAATGTACAGTTTGCAATTCTGTCACCTCAGTTGGGATTTTGAGAAATCAGAGAGAAAGAGAGATAATTATGCAGTCTGCCATGGAGAAGCTGAGTAACATGGGAAGTGTTGCTAAAGAAAAGCTCAAAATTTGTAGAGCCAAACTCGACGAGAAGGTGGAGAAAGCTTCGGTGAAGACAGCAGAGGAGAGGAAGATCGTGGAGGAGAGAAGAAAAGCAGCAACGGCGGAGGCAAAGCGGGAGCTACACGAGGCGAAAGCCAGACATGCAGCTCAAAAGCTAAGGAATAGGAAATCACATGTACTTGGTGGCCATCTACACCATGAATCAACTATGGAGGGCGGTGCCGTCACACATCTTGGAGGAGCAACAAATGTTCCAGCTTATCCTATAACCAGCCCGGAGGGGTACCATCCCGGACATAAAATTTAA 1665 42.82 MEESKNHLSEQNTKGFAKSTKDQKEKLNVYVWDMDETIILLKSLLDGTYAKAFGGSKDIKRGEELGKMWEKEILDLCDHFFFYEQIENYNQPFLDALNEYDDGRDLSNYDFDQDGFGPPCDDVNKRKLAFRQRAITNKYKEGLQKIFDQQKMKRWEELYEMTDVYTDRWFSSARAFLEECSISDEPPLVSADQTSNSTSTSSQHVNILVTSGALIPSLVKCLLFQLDHLITPGNVYSSWEVEKVQCFQWIKERFDKPNVRFCAIGNGWEECEAAQSLKWPFVKIDLQPGSLHRFPGLSLKTIGFYFSVIYGCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTINAASKANQMAHINCGKCRVLLMYQCEAHSVKCTVCNSVTSVGILRNQREREIIMQSAMEKLSNMGSVAKEKLKICRAKLDEKVEKASVKTAEERKIVEERRKAATAEAKRELHEAKARHAAQKLRNRKSHVLGGHLHHESTMEGGAVTHLGGATNVPAYPITSPEGYHPGHKI* 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25635128 25643853 + Chy6G126600.1 Chy06g02132 229841

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g02132 554 Pfam LSD1 zinc finger 318 342 IPR005735 -
Chy06g02132 554 Pfam LSD1 zinc finger 357 381 IPR005735 -
Chy06g02132 554 Pfam LSD1 zinc finger 395 419 IPR005735 -
Chy06g02132 554 TIGRFAM EYA-cons_domain: EYA conserved domain 27 302 IPR006545 GO:0007275
Chy06g02132 554 Pfam Late embryogenesis abundant (LEA) group 1 435 504 IPR005513 GO:0009793
Chy06g02132 554 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 355 382 IPR005735 -
Chy06g02132 554 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 315 344 IPR005735 -
Chy06g02132 554 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 392 422 IPR005735 -
Chy06g02132 554 Gene3D - 28 294 IPR038102 -
Chy06g02132 554 Coils Coil 470 497 - -
Chy06g02132 554 PANTHER DEVELOPMENTAL PROTEIN EYES ABSENT 9 313 - -
Chy06g02132 554 PANTHER EYES ABSENT 9 313 IPR028472 GO:0004725
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g02132 - - - cmo:103490796 620.542
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g00935 Chy-Chr12:14725466 Chy06g02132 Chy-Chr6:25635128 4.25E-08 transposed
Chy04g00074 Chy-Chr4:784259 Chy06g02132 Chy-Chr6:25635128 4.69E-15 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy02g00892 . 33 608 Protein tyrosine phosphatase (PTP) family AT3G50110 62.4 2.6e-193 672.2
Chy01g00080 . 6 613 Protein tyrosine phosphatase (PTP) family AT3G50110 57.3 1.2e-182 636.7
Chy04g01571 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 66.2 3.3e-157 551.6
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT3G10550 68.5 0.0e+00 1177.5
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1114.0
Chy02g02115 . 51 1308 Protein tyrosine phosphatase (PTP) family AT5G58160 53.4 4.6e-306 1047.7
Chy02g02475 CCT 1 376 Protein tyrosine phosphatase (PTP) family AT5G58160 63.3 4.8e-138 489.6
Chy01g01195 . 4 277 Protein tyrosine phosphatase (PTP) family AT1G71860 67.3 2.4e-108 389.0
Chy02g02701 . 11 908 Protein tyrosine phosphatase (PTP) family AT5G23720 64.2 0.0e+00 1075.5
Chy11g01429 . 33 171 Protein tyrosine phosphatase (PTP) family AT3G06110 57.9 8.0e-41 163.7
Chy05g00525 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 76.9 6.0e-71 263.8
Chy10g01271 . 113 393 Protein tyrosine phosphatase (PTP) family AT3G52180 69.0 6.4e-115 410.6
Chy10g00338 . 29 283 Protein tyrosine phosphatase (PTP) family AT3G10940 74.0 1.9e-111 399.1
Chy04g01457 . 141 589 Protein tyrosine phosphatase (PTP) family AT3G01510 71.9 2.0e-203 705.3
Chy11g00950 . 2 214 Protein tyrosine phosphatase (PTP) family AT2G32960 57.5 5.8e-75 277.7
Chy05g00519 . 43 240 Protein tyrosine phosphatase (PTP) family AT2G32960 62.9 8.2e-69 257.3
Chy02g01674 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 52.0 1.8e-55 213.0
Chy06g02072 . 14 348 Protein tyrosine phosphatase (PTP) family AT2G35680 55.6 1.3e-101 366.7
Chy05g01416 . 18 264 Protein tyrosine phosphatase (PTP) family AT2G35680 54.9 1.6e-80 296.6
Chy05g01416 . 28 202 Protein tyrosine phosphatase (PTP) family AT5G56610 52.6 7.8e-45 177.2
Chy06g02072 . 51 226 Protein tyrosine phosphatase (PTP) family AT5G56610 51.7 1.0e-44 176.8
Chy11g00950 . 44 214 Protein tyrosine phosphatase (PTP) family AT4G03960 76.6 2.5e-78 288.5
Chy05g00519 . 41 239 Protein tyrosine phosphatase (PTP) family AT4G03960 61.3 2.2e-66 248.8
Chy02g01674 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.0 5.0e-58 221.1
Chy02g01674 . 1 201 Protein tyrosine phosphatase (PTP) family AT3G02800 68.6 8.1e-80 293.5
Chy11g00950 . 44 208 Protein tyrosine phosphatase (PTP) family AT3G02800 60.6 4.1e-55 211.5
Chy10g00579 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.1 2.2e-61 234.2
Chy04g01571 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 66.2 3.3e-157 551.6
Chy01g00080 . 33 613 Protein tyrosine phosphatase (PTP) family AT3G19420 65.8 2.4e-220 761.9
Chy02g00892 . 31 608 Protein tyrosine phosphatase (PTP) family AT3G19420 61.9 4.6e-195 677.9
Chy02g00892 . 33 608 Protein tyrosine phosphatase (PTP) family AT3G50110 62.4 2.6e-193 672.2
Chy01g00080 . 6 613 Protein tyrosine phosphatase (PTP) family AT3G50110 57.3 1.2e-182 636.7
Chy02g02115 . 51 1308 Protein tyrosine phosphatase (PTP) family AT5G58160 53.4 4.6e-306 1047.7
Chy02g02475 CCT 1 376 Protein tyrosine phosphatase (PTP) family AT5G58160 63.3 4.8e-138 489.6
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT3G10550 68.5 0.0e+00 1177.5
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1114.0
Chy11g00890 . 17 244 Protein tyrosine phosphatase (PTP) family AT3G44620 58.2 5.2e-71 264.6
Chy06g02132 . 27 311 Protein tyrosine phosphatase (PTP) family AT2G35320 64.2 2.5e-109 392.1
Chy08g00661 . 1 673 Protein tyrosine phosphatase (PTP) family AT3G09100 68.7 9.0e-277 949.5
Chy08g00661 . 5 673 Protein tyrosine phosphatase (PTP) family AT5G01290 65.5 3.4e-252 867.8
Chy08g00661 . 86 673 Protein tyrosine phosphatase (PTP) family AT5G28210 56.4 4.9e-184 641.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011188 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18233 PF03760 LEA_1 8.10E-18 No_clan Chy TF