Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g02136 ATGGATTCACGGGAGAGGTCGATGCCTTCTGTTCATCAACATCATCAACAATCAACTCCACCCAACAGGATGATCCCCAACAACGCTTCTTATTCCGCTAATATGCCCAATTCCAACAATACTTCCCCTTTGATCAACCCCAATTCCGCTGCTGCTCAAATGATGTCTTCCGCTTCCCGATTTCCCTTCAACTCCATGATGGGTTCCTCTTCTAAGCCCTCCGAATCTCCCAATGCAGCTTCTTATGATGGATCGCAGTCTGAATTGCGCACTGGTGGCTTTAACATTGATTCTGGGAAGAAGAAGAGAGGCCGTCCCAGGAAGTATTCTCCTGATGGGAATATCGCCTTGGGTTTATCACCAACCCCCATCACTTCTTCCGCCGTTCCTGCCGATTCCGCCGGCATGCACTCCCCAGATCCTCGCCCTAAGAAGAACAGGGGACGGCCGCCCGGTACAGGGAAGAGGCAAATGGATGCTTTGGGGACCGGCGGTGTTGGTTTTACTCCTCATGTCATTCTTGTGAAACCAGGAGAGGACATTGCCTCAAAAGTTATGGCATTTTCACAGCAGGGGCCACGGACTGTTTGTATTCTCTCTGCCCATGGGGCTGTCTGCAACGTTACCCTTCAACCTGCATTGTCATCTGGTAGTGTGTCATACGAGGGCCGCTATGAAATCATATCTCTATCAGGTTCCTTTTTGATTTCTGAAAATAATGGTAATCGGAGTCGAAGTGGTGGTTTAAGTGTGTCTCTAGCAAGTGCAGATGGACAAGTACTTGGTGGAATTACCAACATGCTAACGGCAGCATCAACAGTTCAGGTTATTGTCGGTAGCTTTCTCGTGGATGGAAAAAAGCTAGGAGCAAGTATACAGAAATCTGGGCCGTCGTCTACATCTCCCAATATGTTAAACTTTGGTACACCCGTGGCTGCAGGCTGCCCCTCTGAAGGCGCATCAAATAATTCATCTGACGACAATGGTGGTAGCCCTTTAAGCCGGGGGCCTGGAATGTACACCAATGCGAACCAACCAATTCATAATATGCAGATGTATCAACAATTATGGGCTAGCCGAAATCAATAA 1089 48.39 MDSRERSMPSVHQHHQQSTPPNRMIPNNASYSANMPNSNNTSPLINPNSAAAQMMSSASRFPFNSMMGSSSKPSESPNAASYDGSQSELRTGGFNIDSGKKKRGRPRKYSPDGNIALGLSPTPITSSAVPADSAGMHSPDPRPKKNRGRPPGTGKRQMDALGTGGVGFTPHVILVKPGEDIASKVMAFSQQGPRTVCILSAHGAVCNVTLQPALSSGSVSYEGRYEIISLSGSFLISENNGNRSRSGGLSVSLASADGQVLGGITNMLTAASTVQVIVGSFLVDGKKLGASIQKSGPSSTSPNMLNFGTPVAAGCPSEGASNNSSDDNGGSPLSRGPGMYTNANQPIHNMQMYQQLWASRNQ* 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25703791 25711781 - Chy6G126640.1 Chy06g02136 229845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g02136 362 Gene3D - 170 295 - -
Chy06g02136 362 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 82 355 IPR039605 GO:0003680
Chy06g02136 362 Pfam Plants and Prokaryotes Conserved (PCC) domain 170 281 IPR005175 -
Chy06g02136 362 MobiDBLite consensus disorder prediction 292 307 - -
Chy06g02136 362 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 13-LIKE ISOFORM X1 82 355 - -
Chy06g02136 362 ProSiteProfiles PPC domain profile profile. 164 303 IPR005175 -
Chy06g02136 362 MobiDBLite consensus disorder prediction 12 93 - -
Chy06g02136 362 MobiDBLite consensus disorder prediction 316 345 - -
Chy06g02136 362 CDD DUF296 169 281 IPR005175 -
Chy06g02136 362 SMART AT_hook_2 100 112 IPR017956 GO:0003677
Chy06g02136 362 SMART AT_hook_2 144 156 IPR017956 GO:0003677
Chy06g02136 362 MobiDBLite consensus disorder prediction 292 345 - -
Chy06g02136 362 MobiDBLite consensus disorder prediction 1 162 - -
Chy06g02136 362 SUPERFAMILY AF0104/ALDC/Ptd012-like 168 282 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy04g00085 Chy06g02136 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g02136 Chy-Chr6:25703791 Chy11g01635 Chy-Chr11:22872895 5.13E-56 dispersed
Chy03g01005 Chy-Chr3:13564868 Chy06g02136 Chy-Chr6:25703791 5.19E-73 transposed
Chy07g00425 Chy-Chr7:3288150 Chy06g02136 Chy-Chr6:25703791 9.67E-71 transposed
Chy04g00085 Chy-Chr4:857773 Chy06g02136 Chy-Chr6:25703791 1.12E-89 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g02136 - - csv:101204243 677.167