Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy06g02143 | ATGACGGATTATCGTTTGTCGACCATGAATCTCTGGACTGACGAGAACGCGTCGGTTATGGACGCTTTCATGAATTCCGATCTATCTTCCTACTGGGCTCCATCAGCCGCCTCCTCTCACTCTCTTCACCACCCACCGCCACCTCAGTCCTCCGCCTCCACATCCACTCCCCCACCGGACCCACCCAAGTCCCTCCCCGTTTTCAATCAGGAGACTCTGCAGCAGCGGCTCCAGGCGTTGATCGACGGTGCTAGGGAGAGTTGGACTTATGCGATTTTCTGGCAGTCGTCTTATGATTATTCTGGTGGGTCTGTTTTGGGGTGGGGTGATGGGTATTACAAAGGAGAGGAAGATAAAGGAAAGGGAAAAGCGAAAATGGTGTCGTCAGCGGCGGAGCAGGCTCACCGGAAGAAGGTTTTACGGGAGCTTAACTCTTTGATTTCTGGCTCTGCCGCCGGACCTGACGATGCGGTGGATGAGGAGGTTACGGATACGGAGTGGTTCTTTTTGGTTTCGATGACTCAGTCGTTTGTTAATGGTGTTGGGTTACCGAGTCAAGCGTTTTACCACTCGACGCCGATTTGGGTCTCTGGTGCCGATCGGCTGTCGGCGTCTGACTGTGAACGAGCTAGACAGGGGAGGGTTTTTGGGTTACAGACGATGGTCTGTATTCCATCGCCTAACGGTGTTGTGGAAATGGGTTCGACGGAATTGATTCATCGAACATCGGATTTGATGAATAAGGTCAAGATTCTGTTCAATTTCAATAATCTCGAAACGAGTTCTTGGATTTCGGGAACTACCGCCGCCGCATCCGCTGCCGACGAAGGGGAAAACGACCCGTCGTCGATGTGGATCAGTGAGCCATCGAGTACAATCGAGATGAAAAATTCAATCACCACCACCGTCCCTTCCGGCAACGTTCCGGCAAAGCCAATCCGTTCGGAAAATCCCAGTTCAAGTAGCTTAACGGAAAATATGAGCACGATTCAACAATCCCATCATAAACAGAGCCAAAGCTTTTTGAATTTCTCCGATTACGGCTTCGAATCAAATCCCACAAAGAACACCACCGCCACCGCCACCGCAACCACCAGCACCACCCCATCATTCAAGCCGGAATCCGGCGGGATTCTGAATTTCGGCAACGGAAGCCTCTTCTCCGGCCATTCACAGTACGTAACAAACGAACAGAACGAGAAAAAGAGATCCCCTGCTTCTCGAAGTAGCAACGACGAAGGGATCCTCTCTTTCACGTCCGGCGTGATCTTACCCTCTTCCGGTAAGGTAAAATCCGGCGATTCAGACCACTCAGATCTCGAAGCATCAGTGATCAGAGAAGTGGATAGCTGTACAAAATCATTAGAACCCGAAAAACGTCCAAGAAAAAGAGGTAGAAAACCAGCAAACGGAAGAGAAGAGCCATTGAATCACGTAGAAGCAGAGAGACAACGGCGAGAGAAATTAAACCAGAAATTCTACGCTCTCCGAGCTGTAGTTCCAAACGTATCTAAAATGGACAAAGCCTCACTACTAGGTGACGCGGTTTCGTACATAAACGAGCTCAAATCGAAGCTCCAAATGGCAGAATCGGAGAAAACAGATATGGGAAAACATCTAGAATTGCTGAAGAAGGAGATGGGAGGGAAAGATTTAGGATGTTACTCAAACCCAAATGATGAAGATCTGAAAACAGGGAAAAGAAAGGTAATGGATATGGAGATTGAAGTTAAAATCATGGGTTGGGATGCGATGATAAGGATTCAAAGCAACAAGAAGAATCATCCGGCGGCGAGGTTGATGACGGCGTTTAAGGATTTGGATTTAGAAATGCTTCACGCCAGTGTTTCTGTAGTGAATGATTTGATGATTCAACAAGCAACAGTGAAGATGGGGAGCAGATTTTACACACAAGAGCAGCTTAAAATGGCTCTTGTCGCCCGAGTCGGCGGTGGTGGAAGTGGAGGCGGCGGTGGAATCATGTAA | 1986 | 48.79 | MTDYRLSTMNLWTDENASVMDAFMNSDLSSYWAPSAASSHSLHHPPPPQSSASTSTPPPDPPKSLPVFNQETLQQRLQALIDGARESWTYAIFWQSSYDYSGGSVLGWGDGYYKGEEDKGKGKAKMVSSAAEQAHRKKVLRELNSLISGSAAGPDDAVDEEVTDTEWFFLVSMTQSFVNGVGLPSQAFYHSTPIWVSGADRLSASDCERARQGRVFGLQTMVCIPSPNGVVEMGSTELIHRTSDLMNKVKILFNFNNLETSSWISGTTAAASAADEGENDPSSMWISEPSSTIEMKNSITTTVPSGNVPAKPIRSENPSSSSLTENMSTIQQSHHKQSQSFLNFSDYGFESNPTKNTTATATATTSTTPSFKPESGGILNFGNGSLFSGHSQYVTNEQNEKKRSPASRSSNDEGILSFTSGVILPSSGKVKSGDSDHSDLEASVIREVDSCTKSLEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAVVPNVSKMDKASLLGDAVSYINELKSKLQMAESEKTDMGKHLELLKKEMGGKDLGCYSNPNDEDLKTGKRKVMDMEIEVKIMGWDAMIRIQSNKKNHPAARLMTAFKDLDLEMLHASVSVVNDLMIQQATVKMGSRFYTQEQLKMALVARVGGGGSGGGGGIM* | 662 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 25749137 | 25751122 | - | Chy6G126710.1 | Chy06g02143 | 229852 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy06g02143 | 661 | Pfam | Helix-loop-helix DNA-binding domain | 477 | 522 | IPR011598 | GO:0046983 | |
Chy06g02143 | 661 | Pfam | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 73 | 253 | IPR025610 | - | |
Chy06g02143 | 661 | MobiDBLite | consensus disorder prediction | 36 | 67 | - | - | |
Chy06g02143 | 661 | PANTHER | MYC | 11 | 649 | IPR045084 | GO:0003700|GO:0006355 | |
Chy06g02143 | 661 | MobiDBLite | consensus disorder prediction | 50 | 65 | - | - | |
Chy06g02143 | 661 | PANTHER | TRANSCRIPTION FACTOR MYC2 | 11 | 649 | - | - | |
Chy06g02143 | 661 | SMART | finulus | 479 | 528 | IPR011598 | GO:0046983 | |
Chy06g02143 | 661 | MobiDBLite | consensus disorder prediction | 395 | 414 | - | - | |
Chy06g02143 | 661 | MobiDBLite | consensus disorder prediction | 353 | 374 | - | - | |
Chy06g02143 | 661 | MobiDBLite | consensus disorder prediction | 302 | 326 | - | - | |
Chy06g02143 | 661 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 473 | 522 | IPR011598 | GO:0046983 | |
Chy06g02143 | 661 | Coils | Coil | 526 | 546 | - | - | |
Chy06g02143 | 661 | CDD | bHLH_AtAIB_like | 470 | 546 | - | - | |
Chy06g02143 | 661 | MobiDBLite | consensus disorder prediction | 426 | 483 | - | - | |
Chy06g02143 | 661 | MobiDBLite | consensus disorder prediction | 353 | 377 | - | - | |
Chy06g02143 | 661 | Gene3D | - | 472 | 549 | IPR036638 | GO:0046983 | |
Chy06g02143 | 661 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 476 | 542 | IPR036638 | GO:0046983 | |
Chy06g02143 | 661 | MobiDBLite | consensus disorder prediction | 432 | 483 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Chy04g00093 | Chy06g02143 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy02g00794 | Chy-Chr2:4964598 | Chy06g02143 | Chy-Chr6:25749137 | 1.06E-17 | dispersed | |
Chy02g00795 | Chy-Chr2:4971976 | Chy06g02143 | Chy-Chr6:25749137 | 4.13E-16 | dispersed | |
Chy06g02143 | Chy-Chr6:25749137 | Chy06g02223 | Chy-Chr6:26401561 | 4.90E-21 | dispersed | |
Chy12g00103 | Chy-Chr12:1118448 | Chy06g02143 | Chy-Chr6:25749137 | 2.19E-08 | dispersed | |
Chy01g00164 | Chy-Chr1:1134875 | Chy06g02143 | Chy-Chr6:25749137 | 1.15E-17 | transposed | |
Chy03g01342 | Chy-Chr3:16392434 | Chy06g02143 | Chy-Chr6:25749137 | 5.20E-14 | transposed | |
Chy04g00104 | Chy-Chr4:972765 | Chy06g02143 | Chy-Chr6:25749137 | 3.72E-11 | transposed | |
Chy04g01067 | Chy-Chr4:15999752 | Chy06g02143 | Chy-Chr6:25749137 | 3.37E-13 | transposed | |
Chy05g00628 | Chy-Chr5:7720842 | Chy06g02143 | Chy-Chr6:25749137 | 1.75E-09 | transposed | |
Chy05g01131 | Chy-Chr5:15809475 | Chy06g02143 | Chy-Chr6:25749137 | 1.02E-12 | transposed | |
Chy06g00006 | Chy-Chr6:34274 | Chy06g02143 | Chy-Chr6:25749137 | 1.52E-12 | transposed | |
Chy06g00092 | Chy-Chr6:623456 | Chy06g02143 | Chy-Chr6:25749137 | 6.91E-47 | transposed | |
Chy06g00371 | Chy-Chr6:2484401 | Chy06g02143 | Chy-Chr6:25749137 | 1.19E-16 | transposed | |
Chy11g01724 | Chy-Chr11:23669055 | Chy06g02143 | Chy-Chr6:25749137 | 2.20E-25 | transposed | |
Chy04g00093 | Chy-Chr4:902982 | Chy06g02143 | Chy-Chr6:25749137 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
18235 | PF14215 | bHLH-MYC_N | 9.10E-53 | CL0161 | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy06g02143 | K13422 | - | csv:101205372 | 1171.76 |