Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g02154 ATGGGGAACAACAAAATCACTGACCCCAAAAATCCCTTTGAAGAAATCCCCACTGTTGCTTCTACCTTCAGCGTTTTCGATACTCTCTTCGGTAGCGCCGGTGTTGAAAACCCCCCCGTTTCTATCTTCTCCACTGACAACCCTTTTCGTAGGAAAGCTTCAGATTCTGTTCCTCCTCCACCTGCTGAAAACAGTAGGAAGAAGGGCAAGGACAAAAGGGTTGGTATTGATTTGGATTCTACTGAAGGTGTTAAAACTTCGTCGGAGATTAAGAAATCTAAGAAGAAGGAGAAGCAGAAGTCTCGGGACAGCGAATTGGATGATGTAGATGATGGTGGAGAAAGGGGTTTCAAATCGCAAGGGGGATTGAAGGATAGTAGTAAGAAGAAAGGTACTGTTTTGGGCTCTGAAACTTCAGAGAAGAATCATGGTTTTGACGGGAATAAACTCAGTGAGAATGTTAAATTGATGAAAGAGAGGAAGAAGAGAAAGAGAGATGAACTTGAGAGAGAGTATGAAGCCAAAAAGTATGGTGTATCAGATGTAGCTGAAGATGAAGTAGAAGGTTCAGGGGGGAATGTTGTTGGGAAGAAGAGGAAAGCATTGGATGATCCTTCAGAGATGTTGGTTACAAAGGAAGGTTTTGATGATGAAAGTAAGCTTTTGAGAACTGTGTTTGTTGGGAACTTGCCATTGAAAGTGAAGAAGAAAGCTTTAGCCAAGGAGTTTAGCCAATTTGGAGAGATAGATTCTGTTAGGATCCGGTCTGTACCAATTGACATTGCAAATAGCAAAAAACCAAGGAAGGGGGCAATCATTTCTAAGAAACTCAATGAAGCTGCGGACAGTTCTCATGCATACGTTGTTTTTAAAACAGAGGAATCAGCACAGGCTTCTTTGTCCCATAACATGGCTGTGTTTGCAGGAAATCATATACGAGTCGACAGAGCATGCCCACCCCATAAGAAGTTGAAAGTGGGAAATGGCCCAATCTATGATCCCAAGAGAACTGTTTTTGTGGGTAACCTTCCATTTGATGTAAAGGATGAAGAATTGTATCAATTATTTTGCGGAATCGACAATATGGGATCCAGTGTTGAGGCTGTTCGGGTCATTAGAGATCCCAAGGTGAACGTAGGGAAGGGCTTTGCATATGTTTTCTTTAAAACAAGGGAAGCAGCAAACTCCGTGGTTAATAATCAAAAACTAGAGTTGCGTGGTCGGACGCTGAGGCTCTTTCATGCCAAAACAAATCCAACATCCACTCCATTTAAGAAACGGAATAGACCACCAACGGAAGCTGATCGCACCCCAGCAAAGAAAAATGCTGTGGATTCAGGTTTAGGGACACCAGACAGCAGCAAGAGGGTAACACCAAAGGCAACCAATGCATCCTATCAGGGCTTGCGTGCGAGCAAAAACGGTTCCCAGAAGAAGATCCATACTAAAGGCAGTAGTACGAAATGGCCGAAATCACATTCAAACAGTAAAGAGAAGCCAATAGATCACAAGAAGAGAAAAGGACCAGAGAAGACAAGTGAAAGAAAGGGTAAGAGACCAGCAGTTGCCAACAGAAAGGCTGTGGCGATGGCAACGAAAAATGGCATTGCAACACCGAAACAGGCCGGATTGAAGCGCAAGTCTGATAGCCGAAGTCCAGGGAGCTCTCACAGGAATAAGAGAGTCAAAAGGTTTAGATAG 1701 43.5 MGNNKITDPKNPFEEIPTVASTFSVFDTLFGSAGVENPPVSIFSTDNPFRRKASDSVPPPPAENSRKKGKDKRVGIDLDSTEGVKTSSEIKKSKKKEKQKSRDSELDDVDDGGERGFKSQGGLKDSSKKKGTVLGSETSEKNHGFDGNKLSENVKLMKERKKRKRDELEREYEAKKYGVSDVAEDEVEGSGGNVVGKKRKALDDPSEMLVTKEGFDDESKLLRTVFVGNLPLKVKKKALAKEFSQFGEIDSVRIRSVPIDIANSKKPRKGAIISKKLNEAADSSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPHKKLKVGNGPIYDPKRTVFVGNLPFDVKDEELYQLFCGIDNMGSSVEAVRVIRDPKVNVGKGFAYVFFKTREAANSVVNNQKLELRGRTLRLFHAKTNPTSTPFKKRNRPPTEADRTPAKKNAVDSGLGTPDSSKRVTPKATNASYQGLRASKNGSQKKIHTKGSSTKWPKSHSNSKEKPIDHKKRKGPEKTSERKGKRPAVANRKAVAMATKNGIATPKQAGLKRKSDSRSPGSSHRNKRVKRFR* 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25853771 25856729 + Chy6G126820.1 Chy06g02154 229863

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g02154 566 SUPERFAMILY RNA-binding domain, RBD 223 330 IPR035979 GO:0003676
Chy06g02154 566 CDD RRM1_RBM34 223 315 IPR034220 -
Chy06g02154 566 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 44 564 - -
Chy06g02154 566 SUPERFAMILY RNA-binding domain, RBD 330 430 IPR035979 GO:0003676
Chy06g02154 566 MobiDBLite consensus disorder prediction 447 491 - -
Chy06g02154 566 MobiDBLite consensus disorder prediction 64 169 - -
Chy06g02154 566 Gene3D - 220 324 IPR012677 -
Chy06g02154 566 MobiDBLite consensus disorder prediction 411 566 - -
Chy06g02154 566 PANTHER RNA-BINDING PROTEIN 34 44 564 - -
Chy06g02154 566 Coils Coil 151 178 - -
Chy06g02154 566 MobiDBLite consensus disorder prediction 33 169 - -
Chy06g02154 566 Gene3D - 332 435 IPR012677 -
Chy06g02154 566 SMART rrm1_1 224 315 IPR000504 GO:0003723
Chy06g02154 566 SMART rrm1_1 337 413 IPR000504 GO:0003723
Chy06g02154 566 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 336 417 IPR000504 GO:0003723
Chy06g02154 566 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 338 411 IPR000504 GO:0003723
Chy06g02154 566 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 225 257 IPR000504 GO:0003723
Chy06g02154 566 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 319 IPR000504 GO:0003723
Chy06g02154 566 MobiDBLite consensus disorder prediction 492 521 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g02154 K14837 NOP12; nucleolar protein 12 - csv:101206555 1033.09
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g02154 Chy-Chr6:25853771 Chy06g00827 Chy-Chr6:5834511 2.42E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g690 . Blo03g00119 Bda06g01271 . . Bpe07g00216 . . . . . . . . Sed13g0485 . . Bhi11g00020 Tan01g2206 Cmetu06g0815 . . Mch10g1675 . Cla10g00146 Cam10g0141 Cec10g0151 Cco10g0151 Clacu10g0145 Cmu10g0992 Cre10g0403 Cone8ag0607 . . . Lsi07g01181 . . Cme06g02459 . . . . . . . Bma12g00215 . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00155 Chy06g02154 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010480 2 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31