Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g02160 ATGAGCTTTCAAGATATCGAGGCTGGTCGCCCCTTTGCTTCTTCGAGGAGAGACCTCATCAATGGCAAACAAGATCCTACGCAAGCTGTTGCTTCCGGTATATTTCAGATTAATACTGCTGTTGCTACGTTTCAAAGGCTTGTTAATACCTTAGGTACACCAAAGGATACGCCTGAGCTACGCGAGAAGCTGCACAAGACGAGGTTACATATTGGACAGTTGGTTAAAGACACCTCTGCTAAACTTAAACAAGCCAGCGATATAGATCATCATGCTGAAGTGAATGCCAGCAAGAAAATTGCAGATGCTAAACTTGCAAAAGATTTTCAAGCAGTGTTGAAAGAGTTTCAGAAGGCTCAACGACTTGCAGCCGAGAGGGAAACAGCATATTCACCTTTTGTTCCCCAAACTGTTCTACCTTCAAGCTACACAGCTTGGGAGGCAGATGCAAGCTCAGAAAAGAATCTCGAACAGCGTGCCCTTCTTGTGGAATCCAGGAGGCAAGAGGTCTTGCTGTTGGACAATGAAATAGCCTTCAATGAGGCAATAATTGAGGAAAGAGAGCAAGGCATTCATGAAATCCAGCAGCAAATTGGAGAAGTGAATGAAATTTTTAAAGATCTTGCAGTTCTAGTTCATGAACAGGGAGCCATGATTGATGATATTGGATCCAACATAGAGGGGGCACATGCTGCAACGTCACAGGGAACAACTCAGCTTGTAAAAGCTTCGAAGACACAAAGATCGAATTCATCTCTGGCTTGCTTACTTTTGGTGATATTTGGTATTATCCTCCTCATTGTGATCATAATAGTTGTTGCTTAA 825 43.03 MSFQDIEAGRPFASSRRDLINGKQDPTQAVASGIFQINTAVATFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASDIDHHAEVNASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYSPFVPQTVLPSSYTAWEADASSEKNLEQRALLVESRRQEVLLLDNEIAFNEAIIEEREQGIHEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIEGAHAATSQGTTQLVKASKTQRSNSSLACLLLVIFGIILLIVIIIVVA* 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25892952 25897081 - Chy6G126880.1 Chy06g02160 229869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g02160 274 PANTHER SYNTAXIN OF PLANTS PROTEIN 5 272 - -
Chy06g02160 274 CDD SynN 24 138 IPR006011 GO:0016020
Chy06g02160 274 PANTHER SYNTAXIN 5 272 IPR045242 -
Chy06g02160 274 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 181 243 IPR000727 -
Chy06g02160 274 SUPERFAMILY t-snare proteins 24 236 IPR010989 GO:0016020|GO:0016192
Chy06g02160 274 CDD SNARE_Qa 184 242 - -
Chy06g02160 274 Pfam Syntaxin-like protein 31 130 IPR006011 GO:0016020
Chy06g02160 274 SMART tSNARE_6 176 243 IPR000727 -
Chy06g02160 274 Gene3D - 21 134 - -
Chy06g02160 274 Pfam SNARE domain 218 269 IPR000727 -
Chy06g02160 274 ProSitePatterns Syntaxin / epimorphin family signature. 187 226 IPR006012 GO:0005484|GO:0006886|GO:0016020
Chy06g02160 274 Gene3D - 174 274 - -
Chy06g02160 274 SMART SynN_4 16 128 IPR006011 GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01850 Chy-Chr4:24681494 Chy06g02160 Chy-Chr6:25892952 4.32E-10 dispersed
Chy05g01060 Chy-Chr5:15128760 Chy06g02160 Chy-Chr6:25892952 2.86E-10 dispersed
Chy06g02160 Chy-Chr6:25892952 Chy12g00974 Chy-Chr12:15035977 1.46E-08 dispersed
Chy06g02160 Chy-Chr6:25892952 Chy08g00980 Chy-Chr8:17055773 2.91E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g02160 - K08488 csv:101207682 461.84