Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g02167 ATGGAAGGAATTAATGAACCTAGGCATTATAGAAGTGTTGTTTCGGCGAAGAGAACAAAGACGGAGGCGTGTAAGAATAAGACGCTGTTTCGGGATGAGATGGTGGAGGGAAGAATATGTTCATCGAGAGAGGATAGAAATGGGTTAGCTCTTCTGAAGCTTAAGAGGCTTCAGCCAACAAATTCTGAAACTGCCAACAAAACTTCAGCTGTCAAGAATATGATGAATAGAAGTGGAGGTGATGCTTTAAGGGCCTCAACTCCTTGTGGTGTGAGATTACTTGGTGGCAATGCAGAAACCTTTTCTCGTTCAAGTGGCATGTCACATGAGAGGGATGTCTTTTCAAAAAGGAGAGTAGACAAGTTTGAATATGATGATTTAGAGTGGACCAAGAACATTCCAGAATGTCCCGTGTATTCTCCGTCAAAGGAGGAATTTGAGGATCCTTTGGTCTATTTGCAAAAGATAGCTCCTGAAGCCTCAAAATATGGCATATGCAAGATTGTTTCCCCACTCATTACTTCTGTTACTGCTGGGGCTGTATTAATGAAGGAGAAACCAGGGTTCAAGTTTACAACGAGAGTGCAACCTTTTCGTTTTGCTGAATGGGATACTGATGATCAGGTTACCTTTTACATGAGTGGAAGGAACTATACATTTCGCGATTTTGAAAAAATTGCAAACAAGATATATGCTCGTAGATATAGTAGTTCTGGATGTCTACCTGCGTCATATATGGAAAAGGAATTTTGGCGTGAAATTGCTTGTGGGAAGACAGAAAGTGTTGAATATGCTTGCGATGTTGATGGTAGTGCGTTTTCATCTTCTCCATCTGATGAGCTTGGAACAAGTAAATGGAATTTGAAGAACCTTTCACGGCTACCCAAGTCCATATTGCGCCTTCTGGAAAATCCAATACCGGGAGTAACGGACCCCATGCTTTATATTGGAATGCTGTTTAGTATGTTTGCTTGGCATGTGGAGGATCATTATCTGTACAGTATTAATTATCATCATTGTGGGGCATCTAAAACTTGGTATGGCATTCCTGGTCAAGCAGCTTTGCAGTTTGAAAATGTGGTCAGGGAGCATGTGTACACCCGTGATATCTTATCAACCGGTGGAGAGGATGGAGCATTTGACGTTCTTCTGGGGAAAACGACGCTGTTTCCACCAAGTATTTTGTTGGATCATAAGGTGCCTGTATACAGAGCTGTCCAGCAACCTGGAGAGTTTGTAATTACCTTCCCCAGAGCATATCATGCTGGATTCAGCCATGGCTTCAATTGTGGTGAAGCAGTGAACTTTACGATGGGTGATTGGTTCCCCTTGGGAGCTGTTGCTAGTCAGCGTTATGCACTCCTAAACAGGATGCCTCTAATTCCTCATGAAGAGCTTCTTTGTAAAGAAGCAATGCTTCTCTACACAAATGCAGAATTTGAAGACCCACATTATGCTTCTGCAGAGTTAGCCTCTCATTCTTCTATTAAGACTTCTTTTGTAAGTCTGATTCACTTCCAGCATCGCGCCCGATGGTCATTGATGAAATCAAGAACATGCACTGGTGTATCACCAAATCTTCATGGAACCATCCTATGCAGCTTATGCAAACGTGACTGCTATATATCTTATATCAACTGCAGTTGTTATGGACATCCAGTGTGTCTTCGTCATGATATCAAATCTCTGAACTTCTCATGTGGTAGCAACCGCACACTCATCCTGTGTGAGGATATTTTAGAAATGGAATCCGCAGCTCAGAAATTCGAACAGGAATGTGGAGGCCAAACTAATAACGTTGAAGAATTGTATTCTTATCCTCTGTTAAATTTATTTAAGGGAGCTGATTCGGATGGATACACTCCTTATTGCGAAATAGAAGTGCAGTTGGATTCTGAATTTACTGCTGCTGCTGCTGCGATTTGTCGCTTGAGAGAAAATGAATGTGTTTCCAGTAGCCAGCCTACACAAAGTTGTATCACTGAAAACCATAGACCTGAACCATCAGATCTTTCTCTCTCTTGTGAAGCGTCAACTCTTTGTTCAGTTGTAGACTATAATGAAACATTGTCCACCACTAGCCATGTACCAAGAAATTCAAGTTTTGAGCACTCTTCTGAGATTTCTAACCGTGTACTTGAGTCATCAAGTAATAATCGCTCAAGTTCATCTCTAGGCAGTGTACGTGCATCGGAGCTAACCACTTTAGTAGATCGAGAAAGTGATGATTCTGATGCAGAAATTTTTAGGGTCAAGCGTCGCCCGCTGAAGCTGGATAAAAAGACTGGGAGTGATGCCACGTCTTTAAAGCAGTTTGCTGGCCAGGATGGCCGCAAAAGATTGAAGAGAATCCAAACAAATGGGAACTCTGAGCAACTAAAGCCATCGGATTGCCATGGAACCGACAAATCACGTTATAAATTCTACCCTTCTACTGCTCATAAAGACTCTGCAGAAAGTGATGCAATTGAAAAGTTTGGCAGAGGAAGTATCAAGTGCCAGAGATTCAGCAACGAGAAACTAATGAATAGACAGCGCGCCTACGAACTCAACAGCCGCAGAAGGGAACGGTTTCAGCATGATATGGGAAAGCCCAAAAGGGATCATCATCCACATCCCTCTATGGAAATTGGGCCTAAGCGTCTCAAAATCAGAGGCCCAACAGCCTTAAAAAATCGAGGCCATTCGCACACACGGGTGGTGATGATGATTCAGATTCTTCAAGGCAACCCAAGTCGGTACTGGGCCATTTATCCCGCCGTCCTGGGACAACCTTTGCTGCAGTTCTCTGCTTTTAGCAGAGAGACGCAATTTTTTGGGTCTCATATACATACATATACATATTCTTGTGGGGGCAAAAGGCAAAGCGCTATGCTGCTGCTCCCAGTCCCAG 2893 42.93 MEGINEPRHYRSVVSAKRTKTEACKNKTLFRDEMVEGRICSSREDRNGLALLKLKRLQPTNSETANKTSAVKNMMNRSGGDALRASTPCGVRLLGGNAETFSRSSGMSHERDVFSKRRVDKFEYDDLEWTKNIPECPVYSPSKEEFEDPLVYLQKIAPEASKYGICKIVSPLITSVTAGAVLMKEKPGFKFTTRVQPFRFAEWDTDDQVTFYMSGRNYTFRDFEKIANKIYARRYSSSGCLPASYMEKEFWREIACGKTESVEYACDVDGSAFSSSPSDELGTSKWNLKNLSRLPKSILRLLENPIPGVTDPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGQAALQFENVVREHVYTRDILSTGGEDGAFDVLLGKTTLFPPSILLDHKVPVYRAVQQPGEFVITFPRAYHAGFSHGFNCGEAVNFTMGDWFPLGAVASQRYALLNRMPLIPHEELLCKEAMLLYTNAEFEDPHYASAELASHSSIKTSFVSLIHFQHRARWSLMKSRTCTGVSPNLHGTILCSLCKRDCYISYINCSCYGHPVCLRHDIKSLNFSCGSNRTLILCEDILEMESAAQKFEQECGGQTNNVEELYSYPLLNLFKGADSDGYTPYCEIEVQLDSEFTAAAAAICRLRENECVSSSQPTQSCITENHRPEPSDLSLSCEASTLCSVVDYNETLSTTSHVPRNSSFEHSSEISNRVLESSSNNRSSSSLGSVRASELTTLVDRESDDSDAEIFRVKRRPLKLDKKTGSDATSLKQFAGQDGRKRLKRIQTNGNSEQLKPSDCHGTDKSRYKFYPSTAHKDSAESDAIEKFGRGSIKCQRFSNEKLMNRQRAYELNSRRRERFQHDMGKPKRDHHPHPSMEIGPKRLKIRGPTALKNRGHSHTRVVMMIQILQGNPSRYWAIYPAVLGQPLLQFSAFSRETQFFGSHIHTYTYSCGGKRQSAMLLLPVPX 965
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25943311 25952805 + Chy6G126950.1 Chy06g02167 229876

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g02167 965 SMART JmjN_1 135 176 IPR003349 -
Chy06g02167 965 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 63 890 - -
Chy06g02167 965 PANTHER LYSINE-SPECIFIC DEMETHYLASE 63 890 - -
Chy06g02167 965 SUPERFAMILY Clavaminate synthase-like 214 469 - -
Chy06g02167 965 Pfam JmjC domain, hydroxylase 313 436 IPR003347 -
Chy06g02167 965 ProSiteProfiles JmjC domain profile. 283 453 IPR003347 -
Chy06g02167 965 Gene3D Cupin 136 499 - -
Chy06g02167 965 Pfam C5HC2 zinc finger 533 584 IPR004198 -
Chy06g02167 965 Pfam jmjN domain 137 169 IPR003349 -
Chy06g02167 965 SMART cupin_9 283 453 IPR003347 -
Chy06g02167 965 ProSiteProfiles JmjN domain profile. 136 177 IPR003349 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g02167 - - - csv:101211852 1677.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01475 Chy-Chr1:20497470 Chy06g02167 Chy-Chr6:25943311 1.11E-39 transposed
Chy03g00942 Chy-Chr3:12993061 Chy06g02167 Chy-Chr6:25943311 2.80E-13 transposed
Chy05g00772 Chy-Chr5:10889244 Chy06g02167 Chy-Chr6:25943311 7.48E-59 transposed
Chy09g01220 Chy-Chr9:14300871 Chy06g02167 Chy-Chr6:25943311 1.96E-07 transposed
Chy12g00459 Chy-Chr12:5709409 Chy06g02167 Chy-Chr6:25943311 1.10E-56 transposed
Chy12g01206 Chy-Chr12:16792783 Chy06g02167 Chy-Chr6:25943311 9.62E-78 transposed
Chy04g00121 Chy-Chr4:1076843 Chy06g02167 Chy-Chr6:25943311 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g719 . . . . . . . . . Cmo16g01231 . . . . . Cpe14g00981 . . . . . . . . . . . . . . . Cone8ag0485 . . . Lsi07g01171 . . Cme06g02447 . Blo19g00246 . . Bpe08g00806 . . . . . . . Cma16g01181 . Car16g01115 . . . . . . . . . . . . . . . . . Csa03g00140 Chy06g02167 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001654 1 9 2 2 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 1 2 2 4 1 70
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18238 PF02373 JmjC 2.10E-39 CL0029 Chy TR