Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g02189 ATGGCGACTACCTTTCTTCTTCGCAGAACTTCACCCAGATACCTCTTTCAACCTCCCCTCCATTCTTCTTCTTCCTCTCCTCCACTTCTCCGAAACCTCTGTTCCCTTCTTTTCCGAGATTCCACTTCATGTAATCATCCAAATTCTTGCCCTTCATACACCAGAAGTTTCGTCTCTCTTACTGAAGGTTCTGGTTCCCCTGCTCTCGGTTCTGATACTCGCGTTCCCGCCACTGTGATCACTGGCTTTCTCGGTTCTGGAAAGACGACTCTCCTCAATCATATTCTGACATCTCAACATGGCAAGCGAATTGCGGTTATTGAAAATGAGTTTGGTGAGGTGGATATTGATGGATCCTTGGTTGCCAGTCACTCCTCTGTAGCTGAAGAAATTGTTATGGTTAATAATGGATGCCTTTGCTGCACCGTGCGAGGTGATCTGGTTAAAATGCTCTTGGAGTTGGTCAAGAAAAAACGAGACAAGTTTGATCATATTGTTATTGAAACCACAGGCCTTGCTAAGCCAGGTCCAGTTATCGAAACATTTTGTACAGATGAACTAGTTTCACGTTATGTCAAACTCGATGGTGTTGTAACTTTAGTAGACTCCAAACATGCCATGCAACACTTGAATGAAGTGAAACCAAGATTTGTGGTGAACGAGGCTGTAGAACAAGTTGCATATGCTGATAGGATTATAATGAACAAGATTGATCTTGTAAGTCCAGAAGAATTGGAGCAACTGACGCAGAAGATTAAGCGAATTAATGCAATGGCCCAAGTTAAGTTGACTAAGTTCGGATCTGTTGACATCGACTTTGTATTAGGAGTGGGTGGATATGATCTGGACAGAATTGATTCTCAAGTTGAAGCCAACACTTGTTCTGGAGACCACAAGCATGAAGCTCAACATGAGCACCACAAGGGACACGATCATCATCATCATCACCACCACGACCACGTACACGATTCTGCTGTGTCTAGTGTCAGCATTGTTTCGGAGGGATTACTTGACCTTGATGAGGTTGACGATTGGCTCGAGCGATTAATCGAAGAGAAAGGAGATGACTTGTATAGAATGAAAGGAGTGCTGAGTGTAAATGGTCATGACCAGCGTTATGTCTTTCAGGGAGTGCATTCTATCTTGGATGGGTGCCCAGGCAAAGCATGGGGCTCTGATGAAAAGAGGATTAACAAATTGGTTTTCATAGGAAAGAATTTGGACGAAACTGCCCTTAGAAAAGGTTTTAAAGGTTGTTTAATTTGA 1266 43.21 MATTFLLRRTSPRYLFQPPLHSSSSSPPLLRNLCSLLFRDSTSCNHPNSCPSYTRSFVSLTEGSGSPALGSDTRVPATVITGFLGSGKTTLLNHILTSQHGKRIAVIENEFGEVDIDGSLVASHSSVAEEIVMVNNGCLCCTVRGDLVKMLLELVKKKRDKFDHIVIETTGLAKPGPVIETFCTDELVSRYVKLDGVVTLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIIMNKIDLVSPEELEQLTQKIKRINAMAQVKLTKFGSVDIDFVLGVGGYDLDRIDSQVEANTCSGDHKHEAQHEHHKGHDHHHHHHHDHVHDSAVSSVSIVSEGLLDLDEVDDWLERLIEEKGDDLYRMKGVLSVNGHDQRYVFQGVHSILDGCPGKAWGSDEKRINKLVFIGKNLDETALRKGFKGCLI* 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26130153 26134351 + Chy6G127170.1 Chy06g02189 229898

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g02189 421 Gene3D - 294 420 IPR036627 -
Chy06g02189 421 SMART CobW_C_3 326 420 IPR011629 -
Chy06g02189 421 SUPERFAMILY Hypothetical protein YjiA, C-terminal domain 326 420 - -
Chy06g02189 421 MobiDBLite consensus disorder prediction 295 323 - -
Chy06g02189 421 MobiDBLite consensus disorder prediction 305 320 - -
Chy06g02189 421 Pfam Cobalamin synthesis protein cobW C-terminal domain 326 420 IPR011629 -
Chy06g02189 421 CDD CobW-like 76 278 - -
Chy06g02189 421 Gene3D - 73 280 IPR027417 -
Chy06g02189 421 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 286 IPR027417 -
Chy06g02189 421 PANTHER OSJNBA0083N12.6 PROTEIN 52 421 - -
Chy06g02189 421 PANTHER COBW-RELATED 52 421 - -
Chy06g02189 421 Pfam CobW/HypB/UreG, nucleotide-binding domain 76 261 IPR003495 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g02189 - - - csv:101208167 721.465
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g02189 Chy-Chr6:26130153 Chy07g01579 Chy-Chr7:19960811 6.70E-153 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g820 . . . Bda08g00649 Bpe05g00508 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma05g00693 . . . . . . . . . . . . . . . . . . . . . . . . . . Chy06g02189 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002951 2 0 2 3 2 1 2 1 1 2 1 1 2 2 2 2 1 2 2 1 2 1 2 2 2 1 2 4 4 2 54