Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy06g02198 | ATGGCATCGTCTAAGCTAACGGAAGGAGCAGTGATGGTGATATGCAAGAGGGAATCGTCTGCTGAGACGTTCCAGCCGATTCTACAAGTGATTGACTTGAAATTGGTTAACACTTCGCAACAATCAGGTAGCGAGAGGTTCAGATTGTTGGTTTCTGATGGAACCCATTTCCAGCAAGGCATGCTGGGCACTCAGCTCAACGAATTGGTTAAGTCTGGGAAGTTACAGAAAGGTTCCATCGTTCGACTGCGGCAGTATGTTTGTAACCCCGTTCAAGAACGCCTGATTATAATTGTCATTGAGTTGGATGTGATAGAGGAAATGTGTGACATTATTGGTGAACCTGTATCAGCCACAAGATCGTCAGCTAGTGCATTTAGTGGAAACCCCCTATCCTCTGTGGGGGGTCTGGGGGCTTCACCTGGCAGTGGAATGGTTGGTAAGGGAAATGTATCGAGTGCGTCTTTTGAACAGCCTAAAGTGAATCAATCACATGTACCACACATGGGATCTTATTCTAATCCTCCTGAGACTGGAAGATTCTCTGCATCAATTGCGCCTCCTCCTTACTCTAAGACAGATTCTGGATCAAGGTTTAATGGGCCATCTCCTTTAACTGGATCATATGGTGATCAGAAGATGGCATATCACAACAGCGGGTCAGATATTCCCAGGCCACCTCTAAATTCTAATGCCTATGCCCGTCCTCAGCCAATATATCAGCAGCCACCTTCAATGTACAGTAACAGAGGACCAATAGCAAAAAATGAAGCTGCCCCAAGGATAATGCCTATTTCTGCTCTGAACCCTTACCAAGGTAGGTGGACAATAAAGGCTCGAGTTACTTCAAAAGGAGAACTTAGACACTACAACAATCCTCGTGGTGATGGGAAAGTATTTTCATTTGATTTACTTGATGCTTACCGTGGAGAAATACGAGTAACATGCTTCAATACAGTAGCTGATCAGTTTTACAACCAGATTGAATCTGGTAAAGTCTACTTCATTTCTAAAGGAAGCCTGAAACCTGCTCAAAAGAACTTTAACCATCTCAAAAATGACTATGAAATATTTCTTGAAAACACATCAACAATCCAACCTTGCTTTGAGGATGACCAATCAATCCCCCAGCAGCAGTTTCATTTCCATCCGATTGGTGAGATTGAGGGCATGGACAGCAACAGTGTTGTAGATGTAATTGGAGTTGTTTCTTCCATTAATCCTGCAACTTCTCTGATGAGAAAAAATGGTACTGAAACTCAGAAGAGATCTCTTCAGTTGAAAGATATGTCTGGCCGAAGTGTTGAATTGACTCTTTGGGGGAACTTCTGTCAAGCGGAAGGGCAAAGATTGCAAAATATGTGTGACTCGGGGTTGTTCCCAGTTTTGGCCGTGAAATCTAGCAGAGTAAGCGACTTCAATGGGAAGGCAGTGGGAACCATTTCAACAACTCAGCTCTTTATAGAGCCGGATTTCCCCGAGGCTCATTCACTGAGAGAGTGGTTTGAAAGGGAAGGGAGTAGTACTCTTTCTGTCTCTATATCCAGGGAAGTTGCTAGTGTGGGTAGGACAGATGTCAGGAAGACCATATCTCAAATTAAAGATGAGAGATTAGGAACCTCTGAGAAGCCAGATTGGATCACGGTTAGTGCAACTGTTTCATTTATTAAGGTTGACAACTTCTGCTACACAGCATGTCCTATCATGATTGGGGACCGACAATGTAGCAAAAAGGTTACAAATAATGGAGATGGAAAATGGAGATGTGACAGGTGTGATCAGTCTGTTGACGAATGTGACTACAGGTACATACTCCAGCTGCAAATACAGGATCATACTGGCTTAACTTGGGTAACTGCCTTTCAAGAAGGTGGTGAGGAGATCATGGGCATACCTGCAAAACGATTGCATTATTTGAAGTATGAAGAGCAAGATGATGAGAAATTTGCAGAAATCATCCGGAAGGTTCTTTTTACAAAATTTATAATGAAGTTGAAAATAAAGGAAGAGACTTTTAGTGATGAACAGAGAGTAAGATCAACAGTGGTAAAAGCAGAAAGCATTAATTTTTCAAGCGAATCCAGGTTTCTTCTAAATTTGATGGAAAAACTCAAGCCAGAGAACAGTAGTTCTACTACCCCAAAAGCAGAAAGCACCGTACATAATTTTGGTTTTCGTGACACTGCTTCTGAGAATATTGGTGGTGGACAGTTCGTGTCACCCATTCGAAATAGTACCAATTTCAGCAGAGAATATGGTACACCCAACCAAGGTGTTCAGTATGGGAACCAGTACAGTAGCTCTAGGCCTTCTCCATCCACACCACTTAACTCGAACACATACTGCAACAGCTGTGGGGGTTCTGGCCACAGCTCAGCGAACTGCCCAAGTATCATGAGCGGTCCTGCACTGTCTGTTGGAGGTGGGATGTATTCTAATCAAGCTTCTGGCCCTTCGGGTGGTACCTCTGGTGAATGCTTCAAATGCCATCAAACTGGGCATTGGGCTAGGGATTGCCCTGGCTTGGCCAATGTCCCTCCAGCTTATGGTAACCGTGGCTTCACGGCTAGGTGA | 2574 | 43.78 | MASSKLTEGAVMVICKRESSAETFQPILQVIDLKLVNTSQQSGSERFRLLVSDGTHFQQGMLGTQLNELVKSGKLQKGSIVRLRQYVCNPVQERLIIIVIELDVIEEMCDIIGEPVSATRSSASAFSGNPLSSVGGLGASPGSGMVGKGNVSSASFEQPKVNQSHVPHMGSYSNPPETGRFSASIAPPPYSKTDSGSRFNGPSPLTGSYGDQKMAYHNSGSDIPRPPLNSNAYARPQPIYQQPPSMYSNRGPIAKNEAAPRIMPISALNPYQGRWTIKARVTSKGELRHYNNPRGDGKVFSFDLLDAYRGEIRVTCFNTVADQFYNQIESGKVYFISKGSLKPAQKNFNHLKNDYEIFLENTSTIQPCFEDDQSIPQQQFHFHPIGEIEGMDSNSVVDVIGVVSSINPATSLMRKNGTETQKRSLQLKDMSGRSVELTLWGNFCQAEGQRLQNMCDSGLFPVLAVKSSRVSDFNGKAVGTISTTQLFIEPDFPEAHSLREWFEREGSSTLSVSISREVASVGRTDVRKTISQIKDERLGTSEKPDWITVSATVSFIKVDNFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKRLHYLKYEEQDDEKFAEIIRKVLFTKFIMKLKIKEETFSDEQRVRSTVVKAESINFSSESRFLLNLMEKLKPENSSSTTPKAESTVHNFGFRDTASENIGGGQFVSPIRNSTNFSREYGTPNQGVQYGNQYSSSRPSPSTPLNSNTYCNSCGGSGHSSANCPSIMSGPALSVGGGMYSNQASGPSGGTSGECFKCHQTGHWARDCPGLANVPPAYGNRGFTAR* | 858 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 26210363 | 26214141 | - | Chy6G127260.1 | Chy06g02198 | 229907 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy06g02198 | 857 | Gene3D | - | 777 | 845 | - | - | |
Chy06g02198 | 857 | PANTHER | REPLICATION PROTEIN A SUBUNIT | 5 | 739 | - | - | |
Chy06g02198 | 857 | SMART | c2hcfinal6 | 825 | 841 | IPR001878 | GO:0003676|GO:0008270 | |
Chy06g02198 | 857 | SMART | c2hcfinal6 | 781 | 797 | IPR001878 | GO:0003676|GO:0008270 | |
Chy06g02198 | 857 | TIGRFAM | rpa1: replication factor-a protein 1 (rpa1) | 239 | 703 | IPR004591 | GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310 | |
Chy06g02198 | 857 | Gene3D | - | 512 | 704 | IPR012340 | - | |
Chy06g02198 | 857 | Gene3D | - | 374 | 511 | IPR012340 | - | |
Chy06g02198 | 857 | MobiDBLite | consensus disorder prediction | 146 | 180 | - | - | |
Chy06g02198 | 857 | CDD | RPA1_DBD_A | 264 | 367 | - | - | |
Chy06g02198 | 857 | SUPERFAMILY | Nucleic acid-binding proteins | 527 | 704 | IPR012340 | - | |
Chy06g02198 | 857 | Gene3D | - | 261 | 370 | IPR012340 | - | |
Chy06g02198 | 857 | Pfam | Replication factor-A C terminal domain | 546 | 697 | IPR013955 | - | |
Chy06g02198 | 857 | SUPERFAMILY | Retrovirus zinc finger-like domains | 807 | 846 | IPR036875 | GO:0003676|GO:0008270 | |
Chy06g02198 | 857 | MobiDBLite | consensus disorder prediction | 188 | 215 | - | - | |
Chy06g02198 | 857 | CDD | RPA1N | 9 | 105 | IPR007199 | GO:0003677|GO:0005634|GO:0006260 | |
Chy06g02198 | 857 | ProSiteProfiles | Zinc finger CCHC-type profile. | 782 | 797 | IPR001878 | GO:0003676|GO:0008270 | |
Chy06g02198 | 857 | Pfam | Replication factor-A protein 1, N-terminal domain | 6 | 106 | IPR007199 | GO:0003677|GO:0005634|GO:0006260 | |
Chy06g02198 | 857 | Gene3D | - | 4 | 119 | IPR012340 | - | |
Chy06g02198 | 857 | SUPERFAMILY | Nucleic acid-binding proteins | 4 | 113 | IPR012340 | - | |
Chy06g02198 | 857 | SUPERFAMILY | Nucleic acid-binding proteins | 380 | 506 | IPR012340 | - | |
Chy06g02198 | 857 | PANTHER | REPLICATION FACTOR A 1, RFA1 | 5 | 739 | IPR004591 | GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310 | |
Chy06g02198 | 857 | SUPERFAMILY | Nucleic acid-binding proteins | 261 | 374 | IPR012340 | - | |
Chy06g02198 | 857 | MobiDBLite | consensus disorder prediction | 732 | 776 | - | - | |
Chy06g02198 | 857 | MobiDBLite | consensus disorder prediction | 143 | 224 | - | - | |
Chy06g02198 | 857 | Pfam | Zinc knuckle | 825 | 840 | IPR001878 | GO:0003676|GO:0008270 | |
Chy06g02198 | 857 | ProSiteProfiles | Zinc finger CCHC-type profile. | 826 | 840 | IPR001878 | GO:0003676|GO:0008270 | |
Chy06g02198 | 857 | MobiDBLite | consensus disorder prediction | 733 | 776 | - | - | |
Chy06g02198 | 857 | CDD | RPA1_DBD_C | 530 | 703 | IPR013955 | - | |
Chy06g02198 | 857 | CDD | RPA1_DBD_B | 396 | 503 | - | - | |
Chy06g02198 | 857 | Pfam | Replication protein A OB domain | 385 | 488 | IPR031657 | - | |
Chy06g02198 | 857 | Pfam | OB-fold nucleic acid binding domain | 275 | 360 | IPR004365 | GO:0003676 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy05g01462 | Chy-Chr5:18406705 | Chy06g02198 | Chy-Chr6:26210363 | 0 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy06g02198 | K07466 | - | csv:101211358 | 1704.11 |