Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g02198 ATGGCATCGTCTAAGCTAACGGAAGGAGCAGTGATGGTGATATGCAAGAGGGAATCGTCTGCTGAGACGTTCCAGCCGATTCTACAAGTGATTGACTTGAAATTGGTTAACACTTCGCAACAATCAGGTAGCGAGAGGTTCAGATTGTTGGTTTCTGATGGAACCCATTTCCAGCAAGGCATGCTGGGCACTCAGCTCAACGAATTGGTTAAGTCTGGGAAGTTACAGAAAGGTTCCATCGTTCGACTGCGGCAGTATGTTTGTAACCCCGTTCAAGAACGCCTGATTATAATTGTCATTGAGTTGGATGTGATAGAGGAAATGTGTGACATTATTGGTGAACCTGTATCAGCCACAAGATCGTCAGCTAGTGCATTTAGTGGAAACCCCCTATCCTCTGTGGGGGGTCTGGGGGCTTCACCTGGCAGTGGAATGGTTGGTAAGGGAAATGTATCGAGTGCGTCTTTTGAACAGCCTAAAGTGAATCAATCACATGTACCACACATGGGATCTTATTCTAATCCTCCTGAGACTGGAAGATTCTCTGCATCAATTGCGCCTCCTCCTTACTCTAAGACAGATTCTGGATCAAGGTTTAATGGGCCATCTCCTTTAACTGGATCATATGGTGATCAGAAGATGGCATATCACAACAGCGGGTCAGATATTCCCAGGCCACCTCTAAATTCTAATGCCTATGCCCGTCCTCAGCCAATATATCAGCAGCCACCTTCAATGTACAGTAACAGAGGACCAATAGCAAAAAATGAAGCTGCCCCAAGGATAATGCCTATTTCTGCTCTGAACCCTTACCAAGGTAGGTGGACAATAAAGGCTCGAGTTACTTCAAAAGGAGAACTTAGACACTACAACAATCCTCGTGGTGATGGGAAAGTATTTTCATTTGATTTACTTGATGCTTACCGTGGAGAAATACGAGTAACATGCTTCAATACAGTAGCTGATCAGTTTTACAACCAGATTGAATCTGGTAAAGTCTACTTCATTTCTAAAGGAAGCCTGAAACCTGCTCAAAAGAACTTTAACCATCTCAAAAATGACTATGAAATATTTCTTGAAAACACATCAACAATCCAACCTTGCTTTGAGGATGACCAATCAATCCCCCAGCAGCAGTTTCATTTCCATCCGATTGGTGAGATTGAGGGCATGGACAGCAACAGTGTTGTAGATGTAATTGGAGTTGTTTCTTCCATTAATCCTGCAACTTCTCTGATGAGAAAAAATGGTACTGAAACTCAGAAGAGATCTCTTCAGTTGAAAGATATGTCTGGCCGAAGTGTTGAATTGACTCTTTGGGGGAACTTCTGTCAAGCGGAAGGGCAAAGATTGCAAAATATGTGTGACTCGGGGTTGTTCCCAGTTTTGGCCGTGAAATCTAGCAGAGTAAGCGACTTCAATGGGAAGGCAGTGGGAACCATTTCAACAACTCAGCTCTTTATAGAGCCGGATTTCCCCGAGGCTCATTCACTGAGAGAGTGGTTTGAAAGGGAAGGGAGTAGTACTCTTTCTGTCTCTATATCCAGGGAAGTTGCTAGTGTGGGTAGGACAGATGTCAGGAAGACCATATCTCAAATTAAAGATGAGAGATTAGGAACCTCTGAGAAGCCAGATTGGATCACGGTTAGTGCAACTGTTTCATTTATTAAGGTTGACAACTTCTGCTACACAGCATGTCCTATCATGATTGGGGACCGACAATGTAGCAAAAAGGTTACAAATAATGGAGATGGAAAATGGAGATGTGACAGGTGTGATCAGTCTGTTGACGAATGTGACTACAGGTACATACTCCAGCTGCAAATACAGGATCATACTGGCTTAACTTGGGTAACTGCCTTTCAAGAAGGTGGTGAGGAGATCATGGGCATACCTGCAAAACGATTGCATTATTTGAAGTATGAAGAGCAAGATGATGAGAAATTTGCAGAAATCATCCGGAAGGTTCTTTTTACAAAATTTATAATGAAGTTGAAAATAAAGGAAGAGACTTTTAGTGATGAACAGAGAGTAAGATCAACAGTGGTAAAAGCAGAAAGCATTAATTTTTCAAGCGAATCCAGGTTTCTTCTAAATTTGATGGAAAAACTCAAGCCAGAGAACAGTAGTTCTACTACCCCAAAAGCAGAAAGCACCGTACATAATTTTGGTTTTCGTGACACTGCTTCTGAGAATATTGGTGGTGGACAGTTCGTGTCACCCATTCGAAATAGTACCAATTTCAGCAGAGAATATGGTACACCCAACCAAGGTGTTCAGTATGGGAACCAGTACAGTAGCTCTAGGCCTTCTCCATCCACACCACTTAACTCGAACACATACTGCAACAGCTGTGGGGGTTCTGGCCACAGCTCAGCGAACTGCCCAAGTATCATGAGCGGTCCTGCACTGTCTGTTGGAGGTGGGATGTATTCTAATCAAGCTTCTGGCCCTTCGGGTGGTACCTCTGGTGAATGCTTCAAATGCCATCAAACTGGGCATTGGGCTAGGGATTGCCCTGGCTTGGCCAATGTCCCTCCAGCTTATGGTAACCGTGGCTTCACGGCTAGGTGA 2574 43.78 MASSKLTEGAVMVICKRESSAETFQPILQVIDLKLVNTSQQSGSERFRLLVSDGTHFQQGMLGTQLNELVKSGKLQKGSIVRLRQYVCNPVQERLIIIVIELDVIEEMCDIIGEPVSATRSSASAFSGNPLSSVGGLGASPGSGMVGKGNVSSASFEQPKVNQSHVPHMGSYSNPPETGRFSASIAPPPYSKTDSGSRFNGPSPLTGSYGDQKMAYHNSGSDIPRPPLNSNAYARPQPIYQQPPSMYSNRGPIAKNEAAPRIMPISALNPYQGRWTIKARVTSKGELRHYNNPRGDGKVFSFDLLDAYRGEIRVTCFNTVADQFYNQIESGKVYFISKGSLKPAQKNFNHLKNDYEIFLENTSTIQPCFEDDQSIPQQQFHFHPIGEIEGMDSNSVVDVIGVVSSINPATSLMRKNGTETQKRSLQLKDMSGRSVELTLWGNFCQAEGQRLQNMCDSGLFPVLAVKSSRVSDFNGKAVGTISTTQLFIEPDFPEAHSLREWFEREGSSTLSVSISREVASVGRTDVRKTISQIKDERLGTSEKPDWITVSATVSFIKVDNFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKRLHYLKYEEQDDEKFAEIIRKVLFTKFIMKLKIKEETFSDEQRVRSTVVKAESINFSSESRFLLNLMEKLKPENSSSTTPKAESTVHNFGFRDTASENIGGGQFVSPIRNSTNFSREYGTPNQGVQYGNQYSSSRPSPSTPLNSNTYCNSCGGSGHSSANCPSIMSGPALSVGGGMYSNQASGPSGGTSGECFKCHQTGHWARDCPGLANVPPAYGNRGFTAR* 858
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26210363 26214141 - Chy6G127260.1 Chy06g02198 229907

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g02198 857 Gene3D - 777 845 - -
Chy06g02198 857 PANTHER REPLICATION PROTEIN A SUBUNIT 5 739 - -
Chy06g02198 857 SMART c2hcfinal6 825 841 IPR001878 GO:0003676|GO:0008270
Chy06g02198 857 SMART c2hcfinal6 781 797 IPR001878 GO:0003676|GO:0008270
Chy06g02198 857 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 239 703 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Chy06g02198 857 Gene3D - 512 704 IPR012340 -
Chy06g02198 857 Gene3D - 374 511 IPR012340 -
Chy06g02198 857 MobiDBLite consensus disorder prediction 146 180 - -
Chy06g02198 857 CDD RPA1_DBD_A 264 367 - -
Chy06g02198 857 SUPERFAMILY Nucleic acid-binding proteins 527 704 IPR012340 -
Chy06g02198 857 Gene3D - 261 370 IPR012340 -
Chy06g02198 857 Pfam Replication factor-A C terminal domain 546 697 IPR013955 -
Chy06g02198 857 SUPERFAMILY Retrovirus zinc finger-like domains 807 846 IPR036875 GO:0003676|GO:0008270
Chy06g02198 857 MobiDBLite consensus disorder prediction 188 215 - -
Chy06g02198 857 CDD RPA1N 9 105 IPR007199 GO:0003677|GO:0005634|GO:0006260
Chy06g02198 857 ProSiteProfiles Zinc finger CCHC-type profile. 782 797 IPR001878 GO:0003676|GO:0008270
Chy06g02198 857 Pfam Replication factor-A protein 1, N-terminal domain 6 106 IPR007199 GO:0003677|GO:0005634|GO:0006260
Chy06g02198 857 Gene3D - 4 119 IPR012340 -
Chy06g02198 857 SUPERFAMILY Nucleic acid-binding proteins 4 113 IPR012340 -
Chy06g02198 857 SUPERFAMILY Nucleic acid-binding proteins 380 506 IPR012340 -
Chy06g02198 857 PANTHER REPLICATION FACTOR A 1, RFA1 5 739 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Chy06g02198 857 SUPERFAMILY Nucleic acid-binding proteins 261 374 IPR012340 -
Chy06g02198 857 MobiDBLite consensus disorder prediction 732 776 - -
Chy06g02198 857 MobiDBLite consensus disorder prediction 143 224 - -
Chy06g02198 857 Pfam Zinc knuckle 825 840 IPR001878 GO:0003676|GO:0008270
Chy06g02198 857 ProSiteProfiles Zinc finger CCHC-type profile. 826 840 IPR001878 GO:0003676|GO:0008270
Chy06g02198 857 MobiDBLite consensus disorder prediction 733 776 - -
Chy06g02198 857 CDD RPA1_DBD_C 530 703 IPR013955 -
Chy06g02198 857 CDD RPA1_DBD_B 396 503 - -
Chy06g02198 857 Pfam Replication protein A OB domain 385 488 IPR031657 -
Chy06g02198 857 Pfam OB-fold nucleic acid binding domain 275 360 IPR004365 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g02198 K07466 RFA1, RPA1, rpa; replication factor A1 - csv:101211358 1704.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g01462 Chy-Chr5:18406705 Chy06g02198 Chy-Chr6:26210363 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g886 . . . . . Bpe07g00251 . . Cmo06g00609 Cmo16g01260 . . . . . Cpe14g01003 . . . . . . . . Cla10g00108 Cam10g0103 Cec10g0110 Cco10g0112 Clacu10g0107 Cmu10g0955 Cre10g0366 . . . . Lsi07g01137 . . Cme06g02413 . . . . . . . Bma12g00253 . . . Cma06g00602 Cma16g01216 Car06g00537 Car16g01142 . . . . . . . . . . . . . . . . . Csa03g00107 Chy06g02198 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g00760 . 107 798 Core DNA Replication Machinery Family AT4G14700 66.0 1.6e-267 919.1
Chy02g00078 . 1 376 Core DNA Replication Machinery Family AT4G14700 69.2 8.0e-155 544.7
Chy02g00080 . 83 223 Core DNA Replication Machinery Family AT4G14700 64.4 3.8e-48 190.3
Chy04g00760 . 107 798 Core DNA Replication Machinery Family AT4G12620 67.9 7.0e-276 946.8
Chy02g00078 . 1 376 Core DNA Replication Machinery Family AT4G12620 69.5 2.3e-154 543.1
Chy02g00080 . 83 223 Core DNA Replication Machinery Family AT4G12620 66.7 9.8e-52 202.2
Chy03g01522 . 2 360 Core DNA Replication Machinery Family AT2G37560 65.5 1.1e-140 496.5
Chy10g00355 . 9 413 Core DNA Replication Machinery Family AT2G01120 64.6 1.8e-153 539.3
Chy11g01648 . 3 524 Core DNA Replication Machinery Family AT4G29910 58.2 8.9e-169 590.5
Chy05g00660 . 1 254 Core DNA Replication Machinery Family AT1G26840 66.5 2.4e-90 328.9
Chy01g00870 . 34 829 Core DNA Replication Machinery Family AT1G79150 57.8 2.5e-244 842.0
Chy04g01347 . 10 939 Core DNA Replication Machinery Family AT1G44900 75.5 0.0e+00 1347.0
Chy02g00156 . 1 575 Core DNA Replication Machinery Family AT5G46280 80.7 1.1e-267 919.1
Chy01g00756 . 1 821 Core DNA Replication Machinery Family AT2G16440 76.8 0.0e+00 1120.9
Chy05g01255 . 1 717 Core DNA Replication Machinery Family AT2G07690 77.8 0.0e+00 1078.2
Chy02g00002 . 7 840 Core DNA Replication Machinery Family AT5G44635 72.0 0.0e+00 1190.3
Chy01g01752 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.1 0.0e+00 1218.4
Chy11g01344 . 38 500 Core DNA Replication Machinery Family AT2G29680 60.9 1.2e-159 560.1
Chy11g01344 . 22 465 Core DNA Replication Machinery Family AT1G07270 58.2 1.5e-140 496.5
Chy01g01391 . 1 594 Core DNA Replication Machinery Family AT3G25100 76.4 4.1e-257 884.0
Chy04g02091 . 12 783 Core DNA Replication Machinery Family AT3G09660 72.6 0.0e+00 1085.5
Chy01g00231 . 10 642 Core DNA Replication Machinery Family AT2G14050 77.8 2.7e-286 981.1
Chy11g00257 . 18 420 Core DNA Replication Machinery Family AT2G20980 55.8 8.0e-116 414.1
Chy06g01182 . 7 192 Core DNA Replication Machinery Family AT1G77320 66.7 3.6e-72 270.4
Chy01g02007 . 1 196 Core DNA Replication Machinery Family AT1G80190 66.5 3.6e-72 268.1
Chy07g00809 . 743 887 Core DNA Replication Machinery Family AT3G12530 71.7 1.8e-60 228.8
Chy03g00186 . 22 191 Core DNA Replication Machinery Family AT1G19080 67.6 1.1e-62 236.5
Chy03g00186 . 22 191 Core DNA Replication Machinery Family AT3G55490 67.6 1.1e-62 236.5
Chy06g00159 . 2 164 Core DNA Replication Machinery Family AT5G49010 61.3 3.1e-49 191.8
Chy11g00218 . 1 1546 Core DNA Replication Machinery Family AT5G67100 60.0 0.0e+00 1748.0
Chy12g01485 . 81 704 Core DNA Replication Machinery Family AT1G67630 61.7 4.3e-217 751.1
Chy11g01796 . 8 447 Core DNA Replication Machinery Family AT1G67320 64.9 1.9e-183 639.0
Chy09g00091 . 7 469 Core DNA Replication Machinery Family AT5G41880 61.1 1.5e-166 582.8
Chy08g00986 . 1 1000 Core DNA Replication Machinery Family AT5G63960 80.7 0.0e+00 1652.1
Chy04g01776 . 41 282 Core DNA Replication Machinery Family AT2G42120 78.9 1.6e-117 419.9
Chy11g01796 . 8 447 Core DNA Replication Machinery Family AT1G67320 64.9 1.9e-183 639.0
Chy11g00894 . 1 2096 Core DNA Replication Machinery Family AT1G08260 71.3 0.0e+00 2984.5
Chy11g00894 . 25 2203 Core DNA Replication Machinery Family AT2G27120 67.8 0.0e+00 2949.5
Chy12g01602 . 1 258 Core DNA Replication Machinery Family AT5G22110 76.4 9.7e-119 424.1
Chy05g00194 . 1 921 Core DNA Replication Machinery Family AT5G22010 63.5 1.3e-307 1052.4
Chy06g01971 . 1 332 Core DNA Replication Machinery Family AT1G63160 90.7 6.0e-173 603.6
Chy08g00054 . 1 355 Core DNA Replication Machinery Family AT5G27740 84.8 8.6e-178 619.8
Chy07g00561 . 1 334 Core DNA Replication Machinery Family AT1G21690 81.8 2.4e-153 538.5
Chy03g00774 . 6 220 Core DNA Replication Machinery Family AT1G77470 76.2 1.8e-93 339.7
Chy03g00775 . 1 216 Core DNA Replication Machinery Family AT1G77470 78.3 3.5e-89 325.5
Chy05g01462 . 26 618 Core DNA Replication Machinery Family AT2G06510 67.7 6.6e-250 860.1
Chy06g02198 . 28 701 Core DNA Replication Machinery Family AT2G06510 51.3 1.6e-200 696.0
Chy02g02440 . 1 623 Core DNA Replication Machinery Family AT5G08020 67.6 3.7e-245 844.3
Chy06g02198 . 6 810 Core DNA Replication Machinery Family AT5G45400 53.1 9.1e-234 807.0
Chy02g02440 . 1 618 Core DNA Replication Machinery Family AT5G61000 65.9 6.3e-240 827.0
Chy06g02198 . 1 796 Core DNA Replication Machinery Family AT4G19130 54.2 5.6e-230 794.3
Chy08g01078 . 1 373 Core DNA Replication Machinery Family AT5G26680 85.6 1.4e-182 636.0
Chy06g00300 . 1 1095 Core DNA Replication Machinery Family AT1G08840 52.9 2.9e-298 1021.5
Chy11g00843 . 2 759 Core DNA Replication Machinery Family AT1G08130 69.2 5.4e-297 1016.9
Chy11g00843 . 158 759 Core DNA Replication Machinery Family AT1G49250 69.3 4.9e-243 837.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008728 0 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35