Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g02198 ATGGCATCGTCTAAGCTAACGGAAGGAGCAGTGATGGTGATATGCAAGAGGGAATCGTCTGCTGAGACGTTCCAGCCGATTCTACAAGTGATTGACTTGAAATTGGTTAACACTTCGCAACAATCAGGTAGCGAGAGGTTCAGATTGTTGGTTTCTGATGGAACCCATTTCCAGCAAGGCATGCTGGGCACTCAGCTCAACGAATTGGTTAAGTCTGGGAAGTTACAGAAAGGTTCCATCGTTCGACTGCGGCAGTATGTTTGTAACCCCGTTCAAGAACGCCTGATTATAATTGTCATTGAGTTGGATGTGATAGAGGAAATGTGTGACATTATTGGTGAACCTGTATCAGCCACAAGATCGTCAGCTAGTGCATTTAGTGGAAACCCCCTATCCTCTGTGGGGGGTCTGGGGGCTTCACCTGGCAGTGGAATGGTTGGTAAGGGAAATGTATCGAGTGCGTCTTTTGAACAGCCTAAAGTGAATCAATCACATGTACCACACATGGGATCTTATTCTAATCCTCCTGAGACTGGAAGATTCTCTGCATCAATTGCGCCTCCTCCTTACTCTAAGACAGATTCTGGATCAAGGTTTAATGGGCCATCTCCTTTAACTGGATCATATGGTGATCAGAAGATGGCATATCACAACAGCGGGTCAGATATTCCCAGGCCACCTCTAAATTCTAATGCCTATGCCCGTCCTCAGCCAATATATCAGCAGCCACCTTCAATGTACAGTAACAGAGGACCAATAGCAAAAAATGAAGCTGCCCCAAGGATAATGCCTATTTCTGCTCTGAACCCTTACCAAGGTAGGTGGACAATAAAGGCTCGAGTTACTTCAAAAGGAGAACTTAGACACTACAACAATCCTCGTGGTGATGGGAAAGTATTTTCATTTGATTTACTTGATGCTTACCGTGGAGAAATACGAGTAACATGCTTCAATACAGTAGCTGATCAGTTTTACAACCAGATTGAATCTGGTAAAGTCTACTTCATTTCTAAAGGAAGCCTGAAACCTGCTCAAAAGAACTTTAACCATCTCAAAAATGACTATGAAATATTTCTTGAAAACACATCAACAATCCAACCTTGCTTTGAGGATGACCAATCAATCCCCCAGCAGCAGTTTCATTTCCATCCGATTGGTGAGATTGAGGGCATGGACAGCAACAGTGTTGTAGATGTAATTGGAGTTGTTTCTTCCATTAATCCTGCAACTTCTCTGATGAGAAAAAATGGTACTGAAACTCAGAAGAGATCTCTTCAGTTGAAAGATATGTCTGGCCGAAGTGTTGAATTGACTCTTTGGGGGAACTTCTGTCAAGCGGAAGGGCAAAGATTGCAAAATATGTGTGACTCGGGGTTGTTCCCAGTTTTGGCCGTGAAATCTAGCAGAGTAAGCGACTTCAATGGGAAGGCAGTGGGAACCATTTCAACAACTCAGCTCTTTATAGAGCCGGATTTCCCCGAGGCTCATTCACTGAGAGAGTGGTTTGAAAGGGAAGGGAGTAGTACTCTTTCTGTCTCTATATCCAGGGAAGTTGCTAGTGTGGGTAGGACAGATGTCAGGAAGACCATATCTCAAATTAAAGATGAGAGATTAGGAACCTCTGAGAAGCCAGATTGGATCACGGTTAGTGCAACTGTTTCATTTATTAAGGTTGACAACTTCTGCTACACAGCATGTCCTATCATGATTGGGGACCGACAATGTAGCAAAAAGGTTACAAATAATGGAGATGGAAAATGGAGATGTGACAGGTGTGATCAGTCTGTTGACGAATGTGACTACAGGTACATACTCCAGCTGCAAATACAGGATCATACTGGCTTAACTTGGGTAACTGCCTTTCAAGAAGGTGGTGAGGAGATCATGGGCATACCTGCAAAACGATTGCATTATTTGAAGTATGAAGAGCAAGATGATGAGAAATTTGCAGAAATCATCCGGAAGGTTCTTTTTACAAAATTTATAATGAAGTTGAAAATAAAGGAAGAGACTTTTAGTGATGAACAGAGAGTAAGATCAACAGTGGTAAAAGCAGAAAGCATTAATTTTTCAAGCGAATCCAGGTTTCTTCTAAATTTGATGGAAAAACTCAAGCCAGAGAACAGTAGTTCTACTACCCCAAAAGCAGAAAGCACCGTACATAATTTTGGTTTTCGTGACACTGCTTCTGAGAATATTGGTGGTGGACAGTTCGTGTCACCCATTCGAAATAGTACCAATTTCAGCAGAGAATATGGTACACCCAACCAAGGTGTTCAGTATGGGAACCAGTACAGTAGCTCTAGGCCTTCTCCATCCACACCACTTAACTCGAACACATACTGCAACAGCTGTGGGGGTTCTGGCCACAGCTCAGCGAACTGCCCAAGTATCATGAGCGGTCCTGCACTGTCTGTTGGAGGTGGGATGTATTCTAATCAAGCTTCTGGCCCTTCGGGTGGTACCTCTGGTGAATGCTTCAAATGCCATCAAACTGGGCATTGGGCTAGGGATTGCCCTGGCTTGGCCAATGTCCCTCCAGCTTATGGTAACCGTGGCTTCACGGCTAGGTGA 2574 43.78 MASSKLTEGAVMVICKRESSAETFQPILQVIDLKLVNTSQQSGSERFRLLVSDGTHFQQGMLGTQLNELVKSGKLQKGSIVRLRQYVCNPVQERLIIIVIELDVIEEMCDIIGEPVSATRSSASAFSGNPLSSVGGLGASPGSGMVGKGNVSSASFEQPKVNQSHVPHMGSYSNPPETGRFSASIAPPPYSKTDSGSRFNGPSPLTGSYGDQKMAYHNSGSDIPRPPLNSNAYARPQPIYQQPPSMYSNRGPIAKNEAAPRIMPISALNPYQGRWTIKARVTSKGELRHYNNPRGDGKVFSFDLLDAYRGEIRVTCFNTVADQFYNQIESGKVYFISKGSLKPAQKNFNHLKNDYEIFLENTSTIQPCFEDDQSIPQQQFHFHPIGEIEGMDSNSVVDVIGVVSSINPATSLMRKNGTETQKRSLQLKDMSGRSVELTLWGNFCQAEGQRLQNMCDSGLFPVLAVKSSRVSDFNGKAVGTISTTQLFIEPDFPEAHSLREWFEREGSSTLSVSISREVASVGRTDVRKTISQIKDERLGTSEKPDWITVSATVSFIKVDNFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKRLHYLKYEEQDDEKFAEIIRKVLFTKFIMKLKIKEETFSDEQRVRSTVVKAESINFSSESRFLLNLMEKLKPENSSSTTPKAESTVHNFGFRDTASENIGGGQFVSPIRNSTNFSREYGTPNQGVQYGNQYSSSRPSPSTPLNSNTYCNSCGGSGHSSANCPSIMSGPALSVGGGMYSNQASGPSGGTSGECFKCHQTGHWARDCPGLANVPPAYGNRGFTAR* 858
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26210363 26214141 - Chy6G127260.1 Chy06g02198 229907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g02198 857 Gene3D - 777 845 - -
Chy06g02198 857 PANTHER REPLICATION PROTEIN A SUBUNIT 5 739 - -
Chy06g02198 857 SMART c2hcfinal6 825 841 IPR001878 GO:0003676|GO:0008270
Chy06g02198 857 SMART c2hcfinal6 781 797 IPR001878 GO:0003676|GO:0008270
Chy06g02198 857 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 239 703 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Chy06g02198 857 Gene3D - 512 704 IPR012340 -
Chy06g02198 857 Gene3D - 374 511 IPR012340 -
Chy06g02198 857 MobiDBLite consensus disorder prediction 146 180 - -
Chy06g02198 857 CDD RPA1_DBD_A 264 367 - -
Chy06g02198 857 SUPERFAMILY Nucleic acid-binding proteins 527 704 IPR012340 -
Chy06g02198 857 Gene3D - 261 370 IPR012340 -
Chy06g02198 857 Pfam Replication factor-A C terminal domain 546 697 IPR013955 -
Chy06g02198 857 SUPERFAMILY Retrovirus zinc finger-like domains 807 846 IPR036875 GO:0003676|GO:0008270
Chy06g02198 857 MobiDBLite consensus disorder prediction 188 215 - -
Chy06g02198 857 CDD RPA1N 9 105 IPR007199 GO:0003677|GO:0005634|GO:0006260
Chy06g02198 857 ProSiteProfiles Zinc finger CCHC-type profile. 782 797 IPR001878 GO:0003676|GO:0008270
Chy06g02198 857 Pfam Replication factor-A protein 1, N-terminal domain 6 106 IPR007199 GO:0003677|GO:0005634|GO:0006260
Chy06g02198 857 Gene3D - 4 119 IPR012340 -
Chy06g02198 857 SUPERFAMILY Nucleic acid-binding proteins 4 113 IPR012340 -
Chy06g02198 857 SUPERFAMILY Nucleic acid-binding proteins 380 506 IPR012340 -
Chy06g02198 857 PANTHER REPLICATION FACTOR A 1, RFA1 5 739 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Chy06g02198 857 SUPERFAMILY Nucleic acid-binding proteins 261 374 IPR012340 -
Chy06g02198 857 MobiDBLite consensus disorder prediction 732 776 - -
Chy06g02198 857 MobiDBLite consensus disorder prediction 143 224 - -
Chy06g02198 857 Pfam Zinc knuckle 825 840 IPR001878 GO:0003676|GO:0008270
Chy06g02198 857 ProSiteProfiles Zinc finger CCHC-type profile. 826 840 IPR001878 GO:0003676|GO:0008270
Chy06g02198 857 MobiDBLite consensus disorder prediction 733 776 - -
Chy06g02198 857 CDD RPA1_DBD_C 530 703 IPR013955 -
Chy06g02198 857 CDD RPA1_DBD_B 396 503 - -
Chy06g02198 857 Pfam Replication protein A OB domain 385 488 IPR031657 -
Chy06g02198 857 Pfam OB-fold nucleic acid binding domain 275 360 IPR004365 GO:0003676
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g01462 Chy-Chr5:18406705 Chy06g02198 Chy-Chr6:26210363 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g02198 K07466 - csv:101211358 1704.11