Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g02217 ATGGGCATGATGGGTGGACGACAAAGGACCTACACCGCTAATTCCACTGATTATAAGCTTCTTGAAGAGATTGGTTATGGTGCTAGTGCTACTGTTTTTAGAGCGATCTATACTCCCTCGAATGAAGTCGTCGCCATCAAGTGTTTGGATCTTGATCGCTGCAATAGTAATCTTGATGATATACGGAGGGAGGCTCAAACGATGAGTTTGATAGATCATCCAAACCTTGTAAGGGCTTATTGTTCATTTGTTGTTGAACGAAACCTTTGGGTTGTCATGCCATTCATGGCAGAGGGTTCTTGTTTGCACCTAATGAAGACAGCATACTCAGATGGCTTTGAAGAGGTTGCTATTGGTTCTATCCTGAAAGAGACTCTTAAAGCTTTGGAGTACCTTCATCGTCAAGGACACATACATCGGGATGTGAAGGCTGGAAACATACTACTTGATAGTAATGGGTCTGTGAAGCTTGCTGATTTTGGTGTTTCAGCTTGCATGTTTGATACAGGTGATAGACAGCGCTCCAGAAATACCTTTGTGGGAACTCCATGCTGGATGGCACCAGAGGTATTGCAACCAGGAACGGGATATAATTCCAAGGCTGATATTTGGTCCTTTGGTATTACAGCTTTGGAGTTGGCTCATGGTCATGCGCCATTTTCAAAATATCCTCCAATGAAGGTGCTTCTTATGACCATACAAAATGCTCCTCCTGGGCTGGATTATGATAGAGATAAACGGTTCTCTAAGTCTTTTAAAGAAATGGTTGCAATGTGCCTGGTGAAAGATCAAGCCAAGAGGCCAACAGCTGAGAAACTTCTAAAGCACTCCTTTTTCAAGAATGCTAAGCCTCCAGAGGTTTCTTTGAAGAAACTATTCGCTAATTTGCCTCCTCTTTCACATCGTGTAAAGGACCTGCAGCTTAAAGATGCTGCCCAGCTAGCCTTAAAGAAAATGCCTTCAGCAGAGCAAGAAGCATTGTCACAGAGTGAGTACCAGCGAGGAGTAAGTGCGTGGAACTTTGATGTTGAGGATTTGAAAGCCCAAGCTTCCCTGGTGAATGATGATATGGCAGAGATGAAGGAAGAGGAGGAGAATATAAATTCTTGTAGTGTTAAGGATGCCTTCTATCCTCGATCTATTTTGAGGAATTTCAATTCGTGTAATGAATCATCTCAGGATGAACGTGGTGTAGGAGCAAGTGGTCAGGGATTGTCACAAGTAGAGTGCTTGAACAAATGGGGAAACTTTGTGGAAAGTGATGCTCTGAAAGCGGGGTTGCAAGAAAAAATTGGAAAGAGAAATGGAACTAGCACTGAAGCAGAAGCTTCTACCTCTGGCCAAGACATTGTACAAGGCAAGACCAAAACCCAAATGCCAAAAGGTCGTCAAACTCAAAGTGGTCCACTTTTACCTGGCATTGTGCTCAGTCATTCTTTATCAGAAAGAGTGCGAGGCTCTGAGAGGTTTGATTCTGAAATTCAACCATCTGCTGAAAAAAATCGTCGAGAAGCACGGCAAGCTCCAAGCTTTAGTGGTCCACTAATGCTGCCAAACCGCGCCTCAGCAAACAGCCTATCAGCACCCATAAAACCTTCTGGAGGGTTTAGAGATTCAATGGATGACAAATCCAAAGCTAATCTTGTACAAATTAAGGGGCGTTTTTCAGTGACGTCTGAGAACCTAGATCTTGTAAAGGATATTCCATTGAGCACAGTTTCACGTCGGTCTTCACAGAACTCTCCTCTACGAAAGTCGGCTAGTGTTGGTGATTGGATTTTCGATTCCAAGCAGTCTGTCAGCCAACCCCCTAAGGAGGCTTCCAACACGAACATGCCCACATCAATTCTTCTGCCTCATCTTCAGAATCTTTTCCATCAGACCTCGATTCAACAGGATCTTATCGTGAACTTGTTGAATAGCTTACAAACAGCAGACGTGGTTGATGCTACTCAAAATGGAAAGTTACCTCCATTGCCCCGAAGCTCAGAGAATAATGGAAGTGCTGAAACAGCAGCGGTTGAGAGAGAGCGTTTACTTCTGCGGAAAGTCTCTGAACTTCAAGCTAGAATGATGCATTTGACTTATGAATTGACCGCTGAAAAGTTGAAATACATTCAATTACAAGAGCAGTTCAACTCGGCATCTGGTCAGGAAGAAAATGAGATCAAGAGGGAAGAAAATGTCTAG 2190 43.47 MGMMGGRQRTYTANSTDYKLLEEIGYGASATVFRAIYTPSNEVVAIKCLDLDRCNSNLDDIRREAQTMSLIDHPNLVRAYCSFVVERNLWVVMPFMAEGSCLHLMKTAYSDGFEEVAIGSILKETLKALEYLHRQGHIHRDVKAGNILLDSNGSVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVLQPGTGYNSKADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKRFSKSFKEMVAMCLVKDQAKRPTAEKLLKHSFFKNAKPPEVSLKKLFANLPPLSHRVKDLQLKDAAQLALKKMPSAEQEALSQSEYQRGVSAWNFDVEDLKAQASLVNDDMAEMKEEEENINSCSVKDAFYPRSILRNFNSCNESSQDERGVGASGQGLSQVECLNKWGNFVESDALKAGLQEKIGKRNGTSTEAEASTSGQDIVQGKTKTQMPKGRQTQSGPLLPGIVLSHSLSERVRGSERFDSEIQPSAEKNRREARQAPSFSGPLMLPNRASANSLSAPIKPSGGFRDSMDDKSKANLVQIKGRFSVTSENLDLVKDIPLSTVSRRSSQNSPLRKSASVGDWIFDSKQSVSQPPKEASNTNMPTSILLPHLQNLFHQTSIQQDLIVNLLNSLQTADVVDATQNGKLPPLPRSSENNGSAETAAVERERLLLRKVSELQARMMHLTYELTAEKLKYIQLQEQFNSASGQEENEIKREENV* 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26332925 26343049 - Chy6G127450.1 Chy06g02217 229926

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g02217 729 MobiDBLite consensus disorder prediction 482 520 - -
Chy06g02217 729 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 3 721 - -
Chy06g02217 729 SMART serkin_6 18 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy06g02217 729 CDD STKc_OSR1_SPAK 17 279 - -
Chy06g02217 729 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Chy06g02217 729 Gene3D Phosphorylase Kinase; domain 1 7 95 - -
Chy06g02217 729 Pfam Protein kinase domain 18 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy06g02217 729 Gene3D Transferase(Phosphotransferase) domain 1 99 330 - -
Chy06g02217 729 SUPERFAMILY Protein kinase-like (PK-like) 17 335 IPR011009 -
Chy06g02217 729 Coils Coil 343 363 - -
Chy06g02217 729 MobiDBLite consensus disorder prediction 482 506 - -
Chy06g02217 729 ProSiteProfiles Protein kinase domain profile. 18 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy06g02217 729 MobiDBLite consensus disorder prediction 453 472 - -
Chy06g02217 729 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 3 721 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g02217 - - - csv:101213683 1411.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g02217 Chy-Chr6:26332925 Chy09g00338 Chy-Chr9:2955913 0 dispersed
Chy06g02217 Chy-Chr6:26332925 Chy06g00495 Chy-Chr6:3358171 8.34E-107 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy07g00059 . 1 696 MAP Kinase Kinase Kinase Kinase AT1G53165 62.8 4.5e-223 771.2
Chy07g00059 . 1 692 MAP Kinase Kinase Kinase Kinase AT3G15220 64.8 7.7e-231 797.0
Chy07g00059 . 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 51.4 6.3e-67 252.7
Chy09g00338 . 1 641 MAP Kinase Kinase Kinase Kinase AT5G14720 68.3 1.3e-251 865.9
Chy06g02217 . 7 719 MAP Kinase Kinase Kinase Kinase AT4G24100 64.5 8.9e-246 846.7
Chy06g02217 . 11 720 MAP Kinase Kinase Kinase Kinase AT4G10730 65.0 2.2e-246 848.6
Chy09g00338 . 1 422 MAP Kinase Kinase Kinase Kinase AT1G70430 63.4 1.3e-149 526.9
Chy04g01331 . 4 367 MAP Kinase Kinase Kinase Kinase AT1G70430 62.0 1.6e-131 466.8
Chy06g02217 . 3 369 MAP Kinase Kinase Kinase Kinase AT1G70430 57.0 9.0e-119 424.5
Chy04g01331 . 1 676 MAP Kinase Kinase Kinase Kinase AT1G79640 59.5 2.3e-216 748.8
Chy09g00338 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 58.9 5.6e-103 371.7
Chy04g01331 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.5 2.5e-87 319.7
Chy06g02217 . 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 51.2 4.9e-75 278.9
Chy06g00495 CCT 32 496 MAP Kinase Kinase Kinase Kinase AT4G14480 57.1 7.5e-140 494.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005064 3 0 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71351 PF00069 Pkinase 5.20E-61 CL0016 Chy PK