Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g02240 ATGTCTACTCCCTTGAGGAAGGTGTTTTGTAGAATTTCAGGTCTTGCAACTTCTCTGAGGAGAAGCACCGCCCCTCATAGCAGAAGAATTTTTCATAGAGATGTTGAACAACAAGAGTTTCAATATGCAAGCTCTCATTGTCTTTCTTCTTACTACAGTGTCTTTGTTGCTCGCCTTGCCATAATGGTGATGCTAGCTATTTTGATTGGGCTGCTAACAATACTCACATGGCATTTCACAAAGAGCTACACAGCACAGTCTCTGGACAGTTTAGCATATGGCCTTCGTCATGAACTGCTGCAGCGCCCGATCTTACGGATGTGGAGTGTTTTGAATTCCACATCTGAAATAACCACAGCTCAGGTTAAGCTCTCAGAATATGTAATGAAGAAGTACAGCAAGCCCGTGAATCAAGCAGAGCAAGTTGAGCTGTATGAATCAATGAGGGACGTTACTTGGGCAATGTTTGCAAGTCGGAAAGCTCTTAATGCCATAACCATCAATTACAAGAATGGCTTTGTACAGGCATTCCATCGAGATCATAGAAGCAACAATACTTTTTATATTTACTCAGATCTTGCAAACTATTCTATCAGTGCCACTGAATCGCATGGTATCAATAGACTTTCGTCAGGTGAAGGGTGGTCAGAGCCATCCATACACGGCAATGTTTCTGCAAAATGGTTCCGGGAACCACTTGATCCTATTAGTGGTGAAAAGATCGGGAAAGCGAGGCAAATCCCACCAGAGGACTTGATTAATATTGCTGGCATTTCACAGGTGGCAGATGGTGTTGCCTCATGGCATGTTACTGTGAGCAAGTACATGGATACACCGTTGCTTTCTGCAGCTCTGCCTGTTTCTGATGCTTCAAATGAAAGTATAGTTGCAGTGGTGGGCGTTACAACTGCACTTTATAGTGTAGGCCAACTTATGAAGGAGCTTGTTGAGTTCCACAGTGGACATATTTATCTAACCTCTCAGGAGGGCTACTTACTTGCTACTTCGGCCAATGCTCCCCTATTAAGAAATACATCAAGGGGTCCAAAGCTTACCATGGCTGTTGATTCCCAGGATGATGTAATTCGATTAGGAGCCGAGTGGTTACAGAAAACCTATGGAAACAATTTTCCTCCTGGTCATGAGGTCCATGAAGAGAATGTCAAGCTTGGTGATCAGCAATATTACATCGACTCATTTTTTCTTAATCTAAAGAGGCTTCCTATTGTGGGGGTTGTCATCATTCCTAGACAATACATAATGGGAAAGGTAGATGAGAGAGCTTATAAAACATTGGTCATACTTATTTCTGCATCCTTGTGCATCTTAGTTATTGGATGTCTATGCATTTTGATTCTGACGAAAGGAGTATCTAAGGAAATGAAACTAAGGGCAGAACTAATAAGCCATCTTGATGCTAGAAGAAGGGCTGAGGCATCTAGTAATTACAAGAGTCAGTTTCTAGCGAATATGAGTCATGAGCTGAGAACACCAATGGCTGCTGTAATTGGACTGCTGGACATTCTCATGTGTGATGACTGTCTCAATAATGAACAATTTGCAACAGTTACTCAGATTAGAAAATGCTCAACAGCTCTACTCCGACTTCTTAACAACATTCTAGATCTAAGCAAGGTTGAATCTGGAAAGCTGGTTTTGGAAGATGCAGAGTTTGACCTGGGACGGGAACTCGAAGGACTTGTTGATATGTTCTCTGTGCAGTGCATTAACCATAATGTGGAAACTGTATTGGATCTCTCTGACGACATGCCGAAATTCGTTCGAGGAGACTCTGGTCGAGTTGTTCAAATATTCACAAATTTGATTAGCAATTCTATCAAATTCACAACTACTGGTCATATCATTCTTCGAGGGTGGTGTGAGACGTCAAATACTCTTAAAGAAATGGGAAAGTTTTGTATAGATCAGAAGAAATCACGGTTTCCTAATCGGACAAAGATGAAACAACATGGAGAGCACGCAAAGAATGCCTTCAAGAAAGATAACAAAATGACCTTGTGGTTTGAACTTGATGACACTGGATGTGGTATCGATTCAAGCAAATGGGAGTCTGTTTTTGAAAGCTTTGAGCAAGCAGATCCTTCCACAACCCGAACGCATGGTGGCACAGGTCTTGGACTATGCATCGTACGTACCCTGGTTAACAAGATGGGTGGAGAAATCAAGGTTGTAAAGAAAAACGGCCCAGGAACTCTAATGCGATTTTATTTGGTTCTCAGCACTCCTGTAGACTCCACAGATCATCACTGTCAATTTGATTTTGCAAAACATAATGCGGTGGTACTGCTTGCACTCCGTGGCAGCATGAGTCGATTAATCACATCACAGTGGCTTCGTAAAGTTGGACTGTTCACTTTAGAGGCTTCAGAGTGGAACGAACTAACACTAATCCTTCAAGAACTCTTTCAACCCAGAAGTAACGAAAATAAAAAGGGATTTAGTCCACAGGATTCACTAGGTGAAACTTTACGAGCTGAGTTAATGAGAATTAAGGATATGAAAAGCCAAGTATTCATCATTGTTGCCGACATCGGGATACTGGACTTGAGCACAGATATTTGGAAGGACCAACTTTACTTCCTTGACAAGTACTCTGGGAAAGCAAAATTTGCCTGGATGTTAAACCACGATACGTCCAATGCCATAAAGATGGAGCTCAGGGGAAAAGGGCACATTATAATGAACAATAAGCCACTGTACAGATCAAAGATGATTCATATTTTAGAAGCTGTTATGAAAGACAGAAATCTTGAGTTGCAGAGGAAAAATGCTTTAAGAAATGCATCTAAAGAAGGGGATTATCATGAATGTCTTGAAATTGATTCCACTCAGTTTGAAACTGCCAGCTCCGATGATTCTGATGTATTTGAACTTGGGAATTCTAACTCTCAGTGTGCAATTCAAGTCAGAGATAGCCAAGAAGAAATGACAACGAAACCATGTCAGTCATCATTTCTGCCCGTTAACAATAGTTTAGTCGAGTTAACTCATGTACATTCGACCGAGAGTAATGTGAGGACCAGCAATCAGTATGACGCGAGACAAAACTCATCAATGTCTCAATGTCAAAGTTCTGAATCCAACGGACAGAACTTAGGATCCAACTATCCTAAAAGCCAAGGAGAATCACATTCTAATAACGTCCAAGGTAAGAAGTCTCTTGAAGGGCTACGCATTTTGCTTGCAGAAGATACACCAGTTCTCCAAAGAGTAACAACCATAATGCTCGAAAGGATGGGAGCCAAGGTCATTGCTTTCGGAGACGGATTGCAGGCTGTTGAAGCTCTGACTGCCATGCTCAGCGCTGAAGAGCAAAGAAGGGAATTCCCCACAAGATATGACTTGATTTTAATGGATTGCCAAATGCCAAAGATGGATGGCTATGAAGCAACAAAAGCAATTAGAAAGCTAGAAGTGGGAACAAGCCTTCACATTCCGATCGTAGCATTGACAGCCCATGCAATGTCGTCAGATGAAGCCAAATGCTTGGAGGTAGGAATGGATGCATACCTAACAAAGCCAATTGACTATAAACTGATGGTATCCACCATACTCTCTCTCACTCAGAGAAGAGTCTAA 3600 41.75 MSTPLRKVFCRISGLATSLRRSTAPHSRRIFHRDVEQQEFQYASSHCLSSYYSVFVARLAIMVMLAILIGLLTILTWHFTKSYTAQSLDSLAYGLRHELLQRPILRMWSVLNSTSEITTAQVKLSEYVMKKYSKPVNQAEQVELYESMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLANYSISATESHGINRLSSGEGWSEPSIHGNVSAKWFREPLDPISGEKIGKARQIPPEDLINIAGISQVADGVASWHVTVSKYMDTPLLSAALPVSDASNESIVAVVGVTTALYSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLRNTSRGPKLTMAVDSQDDVIRLGAEWLQKTYGNNFPPGHEVHEENVKLGDQQYYIDSFFLNLKRLPIVGVVIIPRQYIMGKVDERAYKTLVILISASLCILVIGCLCILILTKGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKFVRGDSGRVVQIFTNLISNSIKFTTTGHIILRGWCETSNTLKEMGKFCIDQKKSRFPNRTKMKQHGEHAKNAFKKDNKMTLWFELDDTGCGIDSSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVVKKNGPGTLMRFYLVLSTPVDSTDHHCQFDFAKHNAVVLLALRGSMSRLITSQWLRKVGLFTLEASEWNELTLILQELFQPRSNENKKGFSPQDSLGETLRAELMRIKDMKSQVFIIVADIGILDLSTDIWKDQLYFLDKYSGKAKFAWMLNHDTSNAIKMELRGKGHIIMNNKPLYRSKMIHILEAVMKDRNLELQRKNALRNASKEGDYHECLEIDSTQFETASSDDSDVFELGNSNSQCAIQVRDSQEEMTTKPCQSSFLPVNNSLVELTHVHSTESNVRTSNQYDARQNSSMSQCQSSESNGQNLGSNYPKSQGESHSNNVQGKKSLEGLRILLAEDTPVLQRVTTIMLERMGAKVIAFGDGLQAVEALTAMLSAEEQRREFPTRYDLILMDCQMPKMDGYEATKAIRKLEVGTSLHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMVSTILSLTQRRV* 1200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26476601 26482027 + Chy6G127680.1 Chy06g02240 229949

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g02240 1199 Pfam His Kinase A (phospho-acceptor) domain 484 549 IPR003661 GO:0000155|GO:0007165
Chy06g02240 1199 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 596 747 IPR003594 -
Chy06g02240 1199 ProSiteProfiles Response regulatory domain profile. 1065 1195 IPR001789 GO:0000160
Chy06g02240 1199 ProSiteProfiles Histidine kinase domain profile. 490 748 IPR005467 -
Chy06g02240 1199 Gene3D - 1042 1197 - -
Chy06g02240 1199 CDD HisKA 484 545 IPR003661 GO:0000155|GO:0007165
Chy06g02240 1199 PANTHER OSMOSENSOR HISTIDINE KINASE 1 1196 - -
Chy06g02240 1199 Pfam Response regulator receiver domain 1066 1189 IPR001789 GO:0000160
Chy06g02240 1199 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 538 744 IPR036890 -
Chy06g02240 1199 SMART HKATPase_4 596 748 IPR003594 -
Chy06g02240 1199 SMART HisKA_10 483 549 IPR003661 GO:0000155|GO:0007165
Chy06g02240 1199 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 471 550 IPR036097 GO:0000155|GO:0007165
Chy06g02240 1199 CDD REC_hyHK_CKI1_RcsC-like 1066 1191 - -
Chy06g02240 1199 SMART REC_2 1064 1191 IPR001789 GO:0000160
Chy06g02240 1199 Gene3D - 551 749 IPR036890 -
Chy06g02240 1199 SUPERFAMILY CheY-like 1062 1197 IPR011006 -
Chy06g02240 1199 Gene3D - 471 550 - -
Chy06g02240 1199 PRINTS Bacterial sensor protein C-terminal signature 708 726 IPR004358 GO:0016310|GO:0016772
Chy06g02240 1199 PRINTS Bacterial sensor protein C-terminal signature 691 701 IPR004358 GO:0016310|GO:0016772
Chy06g02240 1199 PRINTS Bacterial sensor protein C-terminal signature 673 687 IPR004358 GO:0016310|GO:0016772
Chy06g02240 1199 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1196 - -
Chy06g02240 1199 MobiDBLite consensus disorder prediction 1006 1055 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g02240 - - - csv:101217761 2318.12
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g01037 Chy-Chr5:14972691 Chy06g02240 Chy-Chr6:26476601 1.36E-24 dispersed
Chy06g02240 Chy-Chr6:26476601 Chy10g00085 Chy-Chr10:2159657 1.60E-15 dispersed
Chy06g02240 Chy-Chr6:26476601 Chy05g01262 Chy-Chr5:16978136 3.49E-09 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy06g02240 . 5 1196 Histidine Kinase Gene Family AT2G17820 65.3 0.0e+00 1457.2
Chy10g00085 . 20 1004 Histidine Kinase Gene Family AT2G01830 71.7 0.0e+00 1350.9
Chy11g01787 . 58 1002 Histidine Kinase Gene Family AT2G01830 53.3 2.9e-274 941.8
Chy11g00704 . 304 1259 Histidine Kinase Gene Family AT2G01830 52.1 2.2e-269 925.6
Chy07g00300 . 1 995 Histidine Kinase Gene Family AT5G10720 57.3 3.3e-290 994.6
Chy03g00986 . 35 1154 Histidine Kinase Gene Family AT1G09570 79.7 0.0e+00 1822.4
Chy03g00990 . 3 1144 Histidine Kinase Gene Family AT1G09570 71.1 0.0e+00 1617.4
Chy06g00756 . 34 1121 Histidine Kinase Gene Family AT1G09570 54.6 0.0e+00 1192.9
Chy01g00529 . 18 952 Histidine Kinase Gene Family AT1G09570 57.0 0.0e+00 1082.8
Chy06g00756 . 13 1062 Histidine Kinase Gene Family AT2G18790 78.8 0.0e+00 1665.6
Chy12g00013 . 21 1043 Histidine Kinase Gene Family AT2G18790 59.6 0.0e+00 1239.9
Chy03g00986 . 55 1088 Histidine Kinase Gene Family AT2G18790 53.2 0.0e+00 1085.9
Chy03g00990 . 22 1077 Histidine Kinase Gene Family AT2G18790 50.9 1.8e-306 1048.9
Chy01g00529 . 26 952 Histidine Kinase Gene Family AT2G18790 56.0 8.2e-299 1023.5
Chy01g00529 . 18 954 Histidine Kinase Gene Family AT5G35840 64.1 0.0e+00 1223.8
Chy06g00756 . 21 1123 Histidine Kinase Gene Family AT5G35840 53.1 0.0e+00 1150.2
Chy03g00986 . 43 1148 Histidine Kinase Gene Family AT5G35840 51.7 0.0e+00 1114.4
Chy01g00528 . 1 160 Histidine Kinase Gene Family AT5G35840 52.4 9.3e-37 152.9
Chy06g00756 . 3 1123 Histidine Kinase Gene Family AT4G16250 75.9 0.0e+00 1712.2
Chy12g00013 . 22 1105 Histidine Kinase Gene Family AT4G16250 57.7 0.0e+00 1283.5
Chy03g00986 . 42 1149 Histidine Kinase Gene Family AT4G16250 52.7 0.0e+00 1137.9
Chy01g00529 . 26 952 Histidine Kinase Gene Family AT4G16250 54.4 1.2e-292 1003.0
Chy12g00013 . 31 1119 Histidine Kinase Gene Family AT4G18130 63.2 0.0e+00 1375.5
Chy06g00756 . 38 1121 Histidine Kinase Gene Family AT4G18130 58.9 0.0e+00 1271.5
Chy01g00529 . 27 952 Histidine Kinase Gene Family AT4G18130 50.1 3.2e-255 878.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005785 2 0 2 1 2 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18243 PF02518 HATPase_c 1.20E-22 CL0025 Chy TR