Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g02240 ATGTCTACTCCCTTGAGGAAGGTGTTTTGTAGAATTTCAGGTCTTGCAACTTCTCTGAGGAGAAGCACCGCCCCTCATAGCAGAAGAATTTTTCATAGAGATGTTGAACAACAAGAGTTTCAATATGCAAGCTCTCATTGTCTTTCTTCTTACTACAGTGTCTTTGTTGCTCGCCTTGCCATAATGGTGATGCTAGCTATTTTGATTGGGCTGCTAACAATACTCACATGGCATTTCACAAAGAGCTACACAGCACAGTCTCTGGACAGTTTAGCATATGGCCTTCGTCATGAACTGCTGCAGCGCCCGATCTTACGGATGTGGAGTGTTTTGAATTCCACATCTGAAATAACCACAGCTCAGGTTAAGCTCTCAGAATATGTAATGAAGAAGTACAGCAAGCCCGTGAATCAAGCAGAGCAAGTTGAGCTGTATGAATCAATGAGGGACGTTACTTGGGCAATGTTTGCAAGTCGGAAAGCTCTTAATGCCATAACCATCAATTACAAGAATGGCTTTGTACAGGCATTCCATCGAGATCATAGAAGCAACAATACTTTTTATATTTACTCAGATCTTGCAAACTATTCTATCAGTGCCACTGAATCGCATGGTATCAATAGACTTTCGTCAGGTGAAGGGTGGTCAGAGCCATCCATACACGGCAATGTTTCTGCAAAATGGTTCCGGGAACCACTTGATCCTATTAGTGGTGAAAAGATCGGGAAAGCGAGGCAAATCCCACCAGAGGACTTGATTAATATTGCTGGCATTTCACAGGTGGCAGATGGTGTTGCCTCATGGCATGTTACTGTGAGCAAGTACATGGATACACCGTTGCTTTCTGCAGCTCTGCCTGTTTCTGATGCTTCAAATGAAAGTATAGTTGCAGTGGTGGGCGTTACAACTGCACTTTATAGTGTAGGCCAACTTATGAAGGAGCTTGTTGAGTTCCACAGTGGACATATTTATCTAACCTCTCAGGAGGGCTACTTACTTGCTACTTCGGCCAATGCTCCCCTATTAAGAAATACATCAAGGGGTCCAAAGCTTACCATGGCTGTTGATTCCCAGGATGATGTAATTCGATTAGGAGCCGAGTGGTTACAGAAAACCTATGGAAACAATTTTCCTCCTGGTCATGAGGTCCATGAAGAGAATGTCAAGCTTGGTGATCAGCAATATTACATCGACTCATTTTTTCTTAATCTAAAGAGGCTTCCTATTGTGGGGGTTGTCATCATTCCTAGACAATACATAATGGGAAAGGTAGATGAGAGAGCTTATAAAACATTGGTCATACTTATTTCTGCATCCTTGTGCATCTTAGTTATTGGATGTCTATGCATTTTGATTCTGACGAAAGGAGTATCTAAGGAAATGAAACTAAGGGCAGAACTAATAAGCCATCTTGATGCTAGAAGAAGGGCTGAGGCATCTAGTAATTACAAGAGTCAGTTTCTAGCGAATATGAGTCATGAGCTGAGAACACCAATGGCTGCTGTAATTGGACTGCTGGACATTCTCATGTGTGATGACTGTCTCAATAATGAACAATTTGCAACAGTTACTCAGATTAGAAAATGCTCAACAGCTCTACTCCGACTTCTTAACAACATTCTAGATCTAAGCAAGGTTGAATCTGGAAAGCTGGTTTTGGAAGATGCAGAGTTTGACCTGGGACGGGAACTCGAAGGACTTGTTGATATGTTCTCTGTGCAGTGCATTAACCATAATGTGGAAACTGTATTGGATCTCTCTGACGACATGCCGAAATTCGTTCGAGGAGACTCTGGTCGAGTTGTTCAAATATTCACAAATTTGATTAGCAATTCTATCAAATTCACAACTACTGGTCATATCATTCTTCGAGGGTGGTGTGAGACGTCAAATACTCTTAAAGAAATGGGAAAGTTTTGTATAGATCAGAAGAAATCACGGTTTCCTAATCGGACAAAGATGAAACAACATGGAGAGCACGCAAAGAATGCCTTCAAGAAAGATAACAAAATGACCTTGTGGTTTGAACTTGATGACACTGGATGTGGTATCGATTCAAGCAAATGGGAGTCTGTTTTTGAAAGCTTTGAGCAAGCAGATCCTTCCACAACCCGAACGCATGGTGGCACAGGTCTTGGACTATGCATCGTACGTACCCTGGTTAACAAGATGGGTGGAGAAATCAAGGTTGTAAAGAAAAACGGCCCAGGAACTCTAATGCGATTTTATTTGGTTCTCAGCACTCCTGTAGACTCCACAGATCATCACTGTCAATTTGATTTTGCAAAACATAATGCGGTGGTACTGCTTGCACTCCGTGGCAGCATGAGTCGATTAATCACATCACAGTGGCTTCGTAAAGTTGGACTGTTCACTTTAGAGGCTTCAGAGTGGAACGAACTAACACTAATCCTTCAAGAACTCTTTCAACCCAGAAGTAACGAAAATAAAAAGGGATTTAGTCCACAGGATTCACTAGGTGAAACTTTACGAGCTGAGTTAATGAGAATTAAGGATATGAAAAGCCAAGTATTCATCATTGTTGCCGACATCGGGATACTGGACTTGAGCACAGATATTTGGAAGGACCAACTTTACTTCCTTGACAAGTACTCTGGGAAAGCAAAATTTGCCTGGATGTTAAACCACGATACGTCCAATGCCATAAAGATGGAGCTCAGGGGAAAAGGGCACATTATAATGAACAATAAGCCACTGTACAGATCAAAGATGATTCATATTTTAGAAGCTGTTATGAAAGACAGAAATCTTGAGTTGCAGAGGAAAAATGCTTTAAGAAATGCATCTAAAGAAGGGGATTATCATGAATGTCTTGAAATTGATTCCACTCAGTTTGAAACTGCCAGCTCCGATGATTCTGATGTATTTGAACTTGGGAATTCTAACTCTCAGTGTGCAATTCAAGTCAGAGATAGCCAAGAAGAAATGACAACGAAACCATGTCAGTCATCATTTCTGCCCGTTAACAATAGTTTAGTCGAGTTAACTCATGTACATTCGACCGAGAGTAATGTGAGGACCAGCAATCAGTATGACGCGAGACAAAACTCATCAATGTCTCAATGTCAAAGTTCTGAATCCAACGGACAGAACTTAGGATCCAACTATCCTAAAAGCCAAGGAGAATCACATTCTAATAACGTCCAAGGTAAGAAGTCTCTTGAAGGGCTACGCATTTTGCTTGCAGAAGATACACCAGTTCTCCAAAGAGTAACAACCATAATGCTCGAAAGGATGGGAGCCAAGGTCATTGCTTTCGGAGACGGATTGCAGGCTGTTGAAGCTCTGACTGCCATGCTCAGCGCTGAAGAGCAAAGAAGGGAATTCCCCACAAGATATGACTTGATTTTAATGGATTGCCAAATGCCAAAGATGGATGGCTATGAAGCAACAAAAGCAATTAGAAAGCTAGAAGTGGGAACAAGCCTTCACATTCCGATCGTAGCATTGACAGCCCATGCAATGTCGTCAGATGAAGCCAAATGCTTGGAGGTAGGAATGGATGCATACCTAACAAAGCCAATTGACTATAAACTGATGGTATCCACCATACTCTCTCTCACTCAGAGAAGAGTCTAA 3600 41.75 MSTPLRKVFCRISGLATSLRRSTAPHSRRIFHRDVEQQEFQYASSHCLSSYYSVFVARLAIMVMLAILIGLLTILTWHFTKSYTAQSLDSLAYGLRHELLQRPILRMWSVLNSTSEITTAQVKLSEYVMKKYSKPVNQAEQVELYESMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLANYSISATESHGINRLSSGEGWSEPSIHGNVSAKWFREPLDPISGEKIGKARQIPPEDLINIAGISQVADGVASWHVTVSKYMDTPLLSAALPVSDASNESIVAVVGVTTALYSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLRNTSRGPKLTMAVDSQDDVIRLGAEWLQKTYGNNFPPGHEVHEENVKLGDQQYYIDSFFLNLKRLPIVGVVIIPRQYIMGKVDERAYKTLVILISASLCILVIGCLCILILTKGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKFVRGDSGRVVQIFTNLISNSIKFTTTGHIILRGWCETSNTLKEMGKFCIDQKKSRFPNRTKMKQHGEHAKNAFKKDNKMTLWFELDDTGCGIDSSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVVKKNGPGTLMRFYLVLSTPVDSTDHHCQFDFAKHNAVVLLALRGSMSRLITSQWLRKVGLFTLEASEWNELTLILQELFQPRSNENKKGFSPQDSLGETLRAELMRIKDMKSQVFIIVADIGILDLSTDIWKDQLYFLDKYSGKAKFAWMLNHDTSNAIKMELRGKGHIIMNNKPLYRSKMIHILEAVMKDRNLELQRKNALRNASKEGDYHECLEIDSTQFETASSDDSDVFELGNSNSQCAIQVRDSQEEMTTKPCQSSFLPVNNSLVELTHVHSTESNVRTSNQYDARQNSSMSQCQSSESNGQNLGSNYPKSQGESHSNNVQGKKSLEGLRILLAEDTPVLQRVTTIMLERMGAKVIAFGDGLQAVEALTAMLSAEEQRREFPTRYDLILMDCQMPKMDGYEATKAIRKLEVGTSLHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMVSTILSLTQRRV* 1200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26476601 26482027 + Chy6G127680.1 Chy06g02240 229949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g02240 1199 Pfam His Kinase A (phospho-acceptor) domain 484 549 IPR003661 GO:0000155|GO:0007165
Chy06g02240 1199 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 596 747 IPR003594 -
Chy06g02240 1199 ProSiteProfiles Response regulatory domain profile. 1065 1195 IPR001789 GO:0000160
Chy06g02240 1199 ProSiteProfiles Histidine kinase domain profile. 490 748 IPR005467 -
Chy06g02240 1199 Gene3D - 1042 1197 - -
Chy06g02240 1199 CDD HisKA 484 545 IPR003661 GO:0000155|GO:0007165
Chy06g02240 1199 PANTHER OSMOSENSOR HISTIDINE KINASE 1 1196 - -
Chy06g02240 1199 Pfam Response regulator receiver domain 1066 1189 IPR001789 GO:0000160
Chy06g02240 1199 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 538 744 IPR036890 -
Chy06g02240 1199 SMART HKATPase_4 596 748 IPR003594 -
Chy06g02240 1199 SMART HisKA_10 483 549 IPR003661 GO:0000155|GO:0007165
Chy06g02240 1199 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 471 550 IPR036097 GO:0000155|GO:0007165
Chy06g02240 1199 CDD REC_hyHK_CKI1_RcsC-like 1066 1191 - -
Chy06g02240 1199 SMART REC_2 1064 1191 IPR001789 GO:0000160
Chy06g02240 1199 Gene3D - 551 749 IPR036890 -
Chy06g02240 1199 SUPERFAMILY CheY-like 1062 1197 IPR011006 -
Chy06g02240 1199 Gene3D - 471 550 - -
Chy06g02240 1199 PRINTS Bacterial sensor protein C-terminal signature 708 726 IPR004358 GO:0016310|GO:0016772
Chy06g02240 1199 PRINTS Bacterial sensor protein C-terminal signature 691 701 IPR004358 GO:0016310|GO:0016772
Chy06g02240 1199 PRINTS Bacterial sensor protein C-terminal signature 673 687 IPR004358 GO:0016310|GO:0016772
Chy06g02240 1199 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1196 - -
Chy06g02240 1199 MobiDBLite consensus disorder prediction 1006 1055 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g01037 Chy-Chr5:14972691 Chy06g02240 Chy-Chr6:26476601 1.36E-24 dispersed
Chy06g02240 Chy-Chr6:26476601 Chy10g00085 Chy-Chr10:2159657 1.60E-15 dispersed
Chy06g02240 Chy-Chr6:26476601 Chy05g01262 Chy-Chr5:16978136 3.49E-09 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18243 PF02518 HATPase_c 1.20E-22 CL0025 Chy TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g02240 - - csv:101217761 2318.12