Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy06g02255 | ATGGATTTCATAGCGAACCCGTTTCGCTTTTCTTCATCTTCCTCCCCTTCCTTTGGGAATCTCTTTGAGAGAGTTAGAGAAATTTGCTGCTATGCGGTTTCTGCGATTCTTGGCAATATCTTGTCTGCGATCTTCACTTTCTTCTTCGCCCTAGTTGGGACTTTGCTTGGAGCCATGACCGGAGCATTGATTGGCCAAGAAACTGAAAGTGGGTTTGTTAGAGGAGCTGCTGTTGGGGCAATTTCTGGAGCCGTTTTCTCTATTGAAGTCTTTGAATCTTCTTTGGTTCTTTGGCAATCAGACGAATCAGGGATTGGGTGTCTTCTTTATCTGATTGATGTCATTGCAAGCCTCCTCAGCGGTCGCCTAGTTCGGGAGCGCATCGGTCCGGCCATATTGAGTGCAGTTCAAAGTCAGATGGGTGCTACAGAGACAAGCTTTGACGACATCCCAAACATCTTCGACACCAGCAGTGCAAAAGGATTGCCTGGGGATTCAGTCGAGAAAATCCCCAAGATCGTAGTATCTAAGAACAATAGTGTAGATGCTTACGGTGAAAGAGTCTGTTGTTCTGTTTGCCTTCAGGACTTTCAGCTTGGAGAGACTGTAAGAAGCTTACCATATTGCCATCACATGTTCCATTTGCCTTGCATTGATAAATGGCTTCTTACCCATGGCTCTTGCCCTTTATGCAGAAGGGATCTGTAA | 708 | 45.76 | MDFIANPFRFSSSSSPSFGNLFERVREICCYAVSAILGNILSAIFTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAILSAVQSQMGATETSFDDIPNIFDTSSAKGLPGDSVEKIPKIVVSKNNSVDAYGERVCCSVCLQDFQLGETVRSLPYCHHMFHLPCIDKWLLTHGSCPLCRRDL* | 236 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 26578748 | 26580050 | - | Chy6G127830.1 | Chy06g02255 | 229964 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy06g02255 | 235 | Pfam | Ring finger domain | 190 | 232 | IPR001841 | - | |
| Chy06g02255 | 235 | SMART | ring_2 | 190 | 231 | IPR001841 | - | |
| Chy06g02255 | 235 | PANTHER | NEP1-INTERACTING PROTEIN-LIKE 1 | 9 | 235 | - | - | |
| Chy06g02255 | 235 | CDD | RING-H2_PA-TM-RING | 189 | 232 | - | - | |
| Chy06g02255 | 235 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 152 | 235 | IPR013083 | - | |
| Chy06g02255 | 235 | Pfam | YMGG-like Gly-zipper | 49 | 85 | IPR027367 | - | |
| Chy06g02255 | 235 | SUPERFAMILY | RING/U-box | 176 | 235 | - | - | |
| Chy06g02255 | 235 | ProSiteProfiles | Zinc finger RING-type profile. | 190 | 232 | IPR001841 | - | |
| Chy06g02255 | 235 | PANTHER | NEP1-INTERACTING PROTEIN-LIKE 2 | 9 | 235 | IPR044523 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy06g02255 | Chy-Chr6:26578748 | Chy06g00331 | Chy-Chr6:2210408 | 1.07E-16 | dispersed | |
| Chy09g00829 | Chy-Chr9:10983666 | Chy06g02255 | Chy-Chr6:26578748 | 2.60E-11 | dispersed | |
| Chy06g02255 | Chy-Chr6:26578748 | Chy07g01153 | Chy-Chr7:16428613 | 1.21E-14 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy06g02255 | - | - | csv:101220376 | 460.685 |