Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g02262 ATGCCGATTGAAGATGATGTTGAGAGCTGCGGTAGCAGAGCCACCGACTTCTCCTCTTCCCATGTCAACCCGAGGCATCATCGTCAGAAGCTTGAAGTTTACAACGAAGTCCTTCGACGAATCCAGCAATCCAATTTCCATGAAGCTAATCTACCTGGGTTTGATGATCAGCTTTGGCTTCATTTCAATCGCCTCCCTGCTCGATACGCATTGGATGTGAATGTCGACAGGGCAGAAGATGTCCTTACCCATAAGAGATTACTTCAATTGGCTTTGGATCCGTCTAACCGACCTGTATTTGAAATTCGTTCTGTGCAGGTTTATCCTTCTGCTAATGAAAATTTTATCGATTCTTCTTGTTTGGATGCTTCTATGATGGAAGATGCTCAGAGTTCTTTGAACTATTCTAACAGACAGGGGAACCATCCACCTCCAACCTTTGGCTCTTCACCTAATCTTGAAGCCCCTACGTTTCAGGGCAGCAAGTACGGTGTTGAAGATAGGGACAGTGCGCCAAATGTTACACCCAGCTTTTCTCGGCCAATGCATGAGATCACATTTGCAACAAGTGACAAGCCTAAACTCCTTAGTCAGTTGACTTCCTTACTTGCTGATGTTGGACTTAACATACAAGAAGCTCATGCTTTCTCCTCTGTCGATGGTTTCTCTCTGGATGTTTTTGTCATCGATGGTTGGCCTTATGAGGAAACTGAGGAGCTGAAAAGGGTATTAGAAAAAGAAATTTTAAATTTTAAGGAGCAGTGTTGGTCCGAAAAGCAGCCCAGTTCTGCTTTGGGTAAGCATAACCAGAATAGAGTTGAATCTTTTCCTAGTTGTGTTGGAATACCTACTGATGGTACTGATGTCTGGGAAATGGACATCAGTCAACTAAAATTTGAGAATAAAGTTGGATCTGGGTCATTTGGGGACCTGTATCGGGGCACGTATTGTAGTCAGGAAGTAGCTATTAAAGTACTGAGGCCTGAGCGTATTAATGAAGAGATGCTCAAAGAATTCTCTCAAGAAGTTTATATAATGAGGAAAGTTCGGCACAAAAATGTTGTTCAATTTATTGGTGCTTGTACTAAACCTCCAAACCTCTGTATTGTGACAGAGTTTATGTCGAGAGGAAGTGTATATGACTTCCTTCATAAGCAAAGAGGTGTATTTAACCTTCCATCTTTACTTAAAGTGGCCATTAATATTTCAAGAGGGATGAACTATTTGCATCAAAATAATATAATCCATCGAGACCTCAAGACTGCAAATCTTCTGATGGATGAAAACATGGTTGTCAAGGTTGCTGATTTTGGAGTTGCCAGAGTTCAAACTCAATCTGGAGTGATGACTGCTGAAACTGGAACATACCGGTGGATGGCTCCTGAAGTTATTGAGCATAAACCATATGATCATAAGGCAGACGTTTTCAGCTTTGGAATAGCCTTATGGGAGCTTTTAACTGGAGAAATTCCCTACTCATCCATGACCCCACTACAAGCGGCAGTTGGCGTGGTCCAGAAGAGACTGCGGCCTACGATACCAAAGAATGCCCATCCTGTTCTTGCTGAACTGCTTGAAAGATGCTGGAGGCACGATCCAACCGAACGGCCAAACTTCTCTGAAATTTTGGAGATCCTTAAGCAGACAGCTGAGCAGGTCGACAACAACGGGGAAAATCGACGCAAGAAGGATAAGTTATCCGGTGCATTATTGTCGGCCTTCAAAAAGAGGCACCACTGA 1740 43.1 MPIEDDVESCGSRATDFSSSHVNPRHHRQKLEVYNEVLRRIQQSNFHEANLPGFDDQLWLHFNRLPARYALDVNVDRAEDVLTHKRLLQLALDPSNRPVFEIRSVQVYPSANENFIDSSCLDASMMEDAQSSLNYSNRQGNHPPPTFGSSPNLEAPTFQGSKYGVEDRDSAPNVTPSFSRPMHEITFATSDKPKLLSQLTSLLADVGLNIQEAHAFSSVDGFSLDVFVIDGWPYEETEELKRVLEKEILNFKEQCWSEKQPSSALGKHNQNRVESFPSCVGIPTDGTDVWEMDISQLKFENKVGSGSFGDLYRGTYCSQEVAIKVLRPERINEEMLKEFSQEVYIMRKVRHKNVVQFIGACTKPPNLCIVTEFMSRGSVYDFLHKQRGVFNLPSLLKVAINISRGMNYLHQNNIIHRDLKTANLLMDENMVVKVADFGVARVQTQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIALWELLTGEIPYSSMTPLQAAVGVVQKRLRPTIPKNAHPVLAELLERCWRHDPTERPNFSEILEILKQTAEQVDNNGENRRKKDKLSGALLSAFKKRHH* 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26614440 26620849 + Chy6G127900.1 Chy06g02262 229971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g02262 579 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 17 564 - -
Chy06g02262 579 CDD STKc_MAP3K-like 303 546 - -
Chy06g02262 579 ProSitePatterns Protein kinases ATP-binding region signature. 303 324 IPR017441 GO:0005524
Chy06g02262 579 ProSiteProfiles ACT domain profile. 184 262 IPR002912 -
Chy06g02262 579 CDD ACT_TyrKc 182 249 - -
Chy06g02262 579 MobiDBLite consensus disorder prediction 1 25 - -
Chy06g02262 579 Gene3D Transferase(Phosphotransferase) domain 1 376 577 - -
Chy06g02262 579 Gene3D Phosphorylase Kinase; domain 1 287 375 - -
Chy06g02262 579 Coils Coil 234 254 - -
Chy06g02262 579 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672|GO:0006468
Chy06g02262 579 MobiDBLite consensus disorder prediction 134 157 - -
Chy06g02262 579 SUPERFAMILY ACT-like 182 247 IPR045865 -
Chy06g02262 579 SUPERFAMILY Protein kinase-like (PK-like) 272 546 IPR011009 -
Chy06g02262 579 PRINTS Tyrosine kinase catalytic domain signature 454 464 IPR001245 GO:0004672|GO:0006468
Chy06g02262 579 PRINTS Tyrosine kinase catalytic domain signature 517 539 IPR001245 GO:0004672|GO:0006468
Chy06g02262 579 PRINTS Tyrosine kinase catalytic domain signature 371 384 IPR001245 GO:0004672|GO:0006468
Chy06g02262 579 PRINTS Tyrosine kinase catalytic domain signature 408 426 IPR001245 GO:0004672|GO:0006468
Chy06g02262 579 PRINTS Tyrosine kinase catalytic domain signature 473 495 IPR001245 GO:0004672|GO:0006468
Chy06g02262 579 MobiDBLite consensus disorder prediction 134 178 - -
Chy06g02262 579 Pfam Protein tyrosine and serine/threonine kinase 297 546 IPR001245 GO:0004672|GO:0006468
Chy06g02262 579 PANTHER ACT-LIKE TYROSINE KINASE FAMILY PROTEIN 17 564 - -
Chy06g02262 579 ProSiteProfiles Protein kinase domain profile. 297 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy06g02262 579 SMART serkin_6 297 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00653 Chy-Chr1:4649398 Chy06g02262 Chy-Chr6:26614440 0 dispersed
Chy03g00525 Chy-Chr3:7286151 Chy06g02262 Chy-Chr6:26614440 3.32E-172 dispersed
Chy04g00388 Chy-Chr4:3429929 Chy06g02262 Chy-Chr6:26614440 0 dispersed
Chy06g02262 Chy-Chr6:26614440 Chy12g00928 Chy-Chr12:14655762 3.22E-73 dispersed
Chy06g02262 Chy-Chr6:26614440 Chy12g01272 Chy-Chr12:17302183 2.15E-80 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71352 PF07714 PK_Tyr_Ser-Thr 7.50E-75 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g02262 - - csv:101220844 1165.6